miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2897 5' -59.6 NC_001493.1 + 80994 0.66 0.696801
Target:  5'- -cCUCGUCUgaGUCUuuuUCCugGGGGu- -3'
miRNA:   3'- aaGAGCGGGgaCAGA---AGGugCCCCua -5'
2897 5' -59.6 NC_001493.1 + 48260 0.67 0.64594
Target:  5'- -cCUCGCCgCUGUCgaUCGCGGGa-- -3'
miRNA:   3'- aaGAGCGGgGACAGaaGGUGCCCcua -5'
2897 5' -59.6 NC_001493.1 + 46717 0.67 0.645939
Target:  5'- cUgUCGCCCCUGUCgaggUCCAUGauguacguGGAUc -3'
miRNA:   3'- aAgAGCGGGGACAGa---AGGUGCc-------CCUA- -5'
2897 5' -59.6 NC_001493.1 + 133829 0.67 0.625459
Target:  5'- gUUCUC-CCCgCUGUCcgCCACGGGa-- -3'
miRNA:   3'- -AAGAGcGGG-GACAGaaGGUGCCCcua -5'
2897 5' -59.6 NC_001493.1 + 18275 0.67 0.625459
Target:  5'- gUUCUC-CCCgCUGUCcgCCACGGGa-- -3'
miRNA:   3'- -AAGAGcGGG-GACAGaaGGUGCCCcua -5'
2897 5' -59.6 NC_001493.1 + 92354 0.67 0.594795
Target:  5'- gUCUC-CCCCgggaUGUUUUCCucgacuguACGGGGAUg -3'
miRNA:   3'- aAGAGcGGGG----ACAGAAGG--------UGCCCCUA- -5'
2897 5' -59.6 NC_001493.1 + 21121 1.04 0.002269
Target:  5'- gUUCUCGCCCCUGUCUUCCACGGGGAUg -3'
miRNA:   3'- -AAGAGCGGGGACAGAAGGUGCCCCUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.