miRNA display CGI


Results 1 - 20 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28973 3' -62.9 NC_006146.1 + 2765 0.65 0.647758
Target:  5'- uCGcAGGCC-CA-AGCCCGGaugucagggaagacGCCAGGCg -3'
miRNA:   3'- -GC-UCCGGaGUgUCGGGUC--------------CGGUCCGg -5'
28973 3' -62.9 NC_006146.1 + 95470 0.65 0.647758
Target:  5'- gGGGGCuCUgAgAGCuCCGGGUCaaacucgggggagaAGGCCu -3'
miRNA:   3'- gCUCCG-GAgUgUCG-GGUCCGG--------------UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 46112 0.66 0.640937
Target:  5'- gCGAGcaGCagcagGCAuGCCCGGGCCcuGGCCg -3'
miRNA:   3'- -GCUC--CGgag--UGU-CGGGUCCGGu-CCGG- -5'
28973 3' -62.9 NC_006146.1 + 102491 0.66 0.640937
Target:  5'- -aGGGUCUCGCGGaugaCAGaGUCAGGCa -3'
miRNA:   3'- gcUCCGGAGUGUCgg--GUC-CGGUCCGg -5'
28973 3' -62.9 NC_006146.1 + 123708 0.66 0.640937
Target:  5'- aGGGGCCUgGC-GCUCGGGgC-GGCg -3'
miRNA:   3'- gCUCCGGAgUGuCGGGUCCgGuCCGg -5'
28973 3' -62.9 NC_006146.1 + 128214 0.66 0.640937
Target:  5'- gGGGGgCUCugcCAGCCuCAGGCagcccaccgCGGGCg -3'
miRNA:   3'- gCUCCgGAGu--GUCGG-GUCCG---------GUCCGg -5'
28973 3' -62.9 NC_006146.1 + 62382 0.66 0.640937
Target:  5'- aCGGGGCCUC--GGCCUGGGguaAGGUUa -3'
miRNA:   3'- -GCUCCGGAGugUCGGGUCCgg-UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 55651 0.66 0.640937
Target:  5'- aGGGGUgcaGCAGCCgGaGCCAGGCg -3'
miRNA:   3'- gCUCCGgagUGUCGGgUcCGGUCCGg -5'
28973 3' -62.9 NC_006146.1 + 165945 0.66 0.640937
Target:  5'- gGAGGCuCUCGUGGCCCcugguccccgGGGCaCAgagcacGGCCa -3'
miRNA:   3'- gCUCCG-GAGUGUCGGG----------UCCG-GU------CCGG- -5'
28973 3' -62.9 NC_006146.1 + 137573 0.66 0.639962
Target:  5'- -cGGGUC-CGCugcccgguccuggAGCUCGGGCCggGGGCCg -3'
miRNA:   3'- gcUCCGGaGUG-------------UCGGGUCCGG--UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 130403 0.66 0.635087
Target:  5'- cCGAGGCagaguccgcugccuUUCGCGGCCCcucuGCCccccuucacccaccAGGCCa -3'
miRNA:   3'- -GCUCCG--------------GAGUGUCGGGuc--CGG--------------UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 147743 0.66 0.632163
Target:  5'- -cGGGCCgcgagcgacucugugCAagcgaAGCCCAGGCUcccGGCCu -3'
miRNA:   3'- gcUCCGGa--------------GUg----UCGGGUCCGGu--CCGG- -5'
28973 3' -62.9 NC_006146.1 + 119039 0.66 0.631188
Target:  5'- ----uCUUCAUccccauccccgGGCUCGGGCCAGGCCc -3'
miRNA:   3'- gcuccGGAGUG-----------UCGGGUCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 78021 0.66 0.631188
Target:  5'- gGuGGCCUaGCAGguaCCUGGGCUcguGGCCg -3'
miRNA:   3'- gCuCCGGAgUGUC---GGGUCCGGu--CCGG- -5'
28973 3' -62.9 NC_006146.1 + 169137 0.66 0.631188
Target:  5'- cCGGGGCCgCGCguggggauGGCCggcgggagGGGCCGGcGCCu -3'
miRNA:   3'- -GCUCCGGaGUG--------UCGGg-------UCCGGUC-CGG- -5'
28973 3' -62.9 NC_006146.1 + 167273 0.66 0.631188
Target:  5'- cCGGGGCCgCGCguggggauGGCCggcgggagGGGCCGGcGCCu -3'
miRNA:   3'- -GCUCCGGaGUG--------UCGGg-------UCCGGUC-CGG- -5'
28973 3' -62.9 NC_006146.1 + 117877 0.66 0.631188
Target:  5'- gCGGcGGCCgcggC-CAGCCgCgugAGGCCcaGGGCCa -3'
miRNA:   3'- -GCU-CCGGa---GuGUCGG-G---UCCGG--UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 46384 0.66 0.631188
Target:  5'- -cAGGCCcccgucccUCGCcagGGCCgAGaCCAGGCCg -3'
miRNA:   3'- gcUCCGG--------AGUG---UCGGgUCcGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 49999 0.66 0.631188
Target:  5'- aGAGGCCgucggaggcgaUCcgguugauGCAGCCgGGGUCgAGGCg -3'
miRNA:   3'- gCUCCGG-----------AG--------UGUCGGgUCCGG-UCCGg -5'
28973 3' -62.9 NC_006146.1 + 99558 0.66 0.631188
Target:  5'- cCGGGGCagagaUCGgGGUCCAGGagguagaagaCGGGCUu -3'
miRNA:   3'- -GCUCCGg----AGUgUCGGGUCCg---------GUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.