Results 1 - 20 of 562 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 2765 | 0.65 | 0.647758 |
Target: 5'- uCGcAGGCC-CA-AGCCCGGaugucagggaagacGCCAGGCg -3' miRNA: 3'- -GC-UCCGGaGUgUCGGGUC--------------CGGUCCGg -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 95470 | 0.65 | 0.647758 |
Target: 5'- gGGGGCuCUgAgAGCuCCGGGUCaaacucgggggagaAGGCCu -3' miRNA: 3'- gCUCCG-GAgUgUCG-GGUCCGG--------------UCCGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 62382 | 0.66 | 0.640937 |
Target: 5'- aCGGGGCCUC--GGCCUGGGguaAGGUUa -3' miRNA: 3'- -GCUCCGGAGugUCGGGUCCgg-UCCGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 165945 | 0.66 | 0.640937 |
Target: 5'- gGAGGCuCUCGUGGCCCcugguccccgGGGCaCAgagcacGGCCa -3' miRNA: 3'- gCUCCG-GAGUGUCGGG----------UCCG-GU------CCGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 128214 | 0.66 | 0.640937 |
Target: 5'- gGGGGgCUCugcCAGCCuCAGGCagcccaccgCGGGCg -3' miRNA: 3'- gCUCCgGAGu--GUCGG-GUCCG---------GUCCGg -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 102491 | 0.66 | 0.640937 |
Target: 5'- -aGGGUCUCGCGGaugaCAGaGUCAGGCa -3' miRNA: 3'- gcUCCGGAGUGUCgg--GUC-CGGUCCGg -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 46112 | 0.66 | 0.640937 |
Target: 5'- gCGAGcaGCagcagGCAuGCCCGGGCCcuGGCCg -3' miRNA: 3'- -GCUC--CGgag--UGU-CGGGUCCGGu-CCGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 123708 | 0.66 | 0.640937 |
Target: 5'- aGGGGCCUgGC-GCUCGGGgC-GGCg -3' miRNA: 3'- gCUCCGGAgUGuCGGGUCCgGuCCGg -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 55651 | 0.66 | 0.640937 |
Target: 5'- aGGGGUgcaGCAGCCgGaGCCAGGCg -3' miRNA: 3'- gCUCCGgagUGUCGGgUcCGGUCCGg -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 137573 | 0.66 | 0.639962 |
Target: 5'- -cGGGUC-CGCugcccgguccuggAGCUCGGGCCggGGGCCg -3' miRNA: 3'- gcUCCGGaGUG-------------UCGGGUCCGG--UCCGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 130403 | 0.66 | 0.635087 |
Target: 5'- cCGAGGCagaguccgcugccuUUCGCGGCCCcucuGCCccccuucacccaccAGGCCa -3' miRNA: 3'- -GCUCCG--------------GAGUGUCGGGuc--CGG--------------UCCGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 147743 | 0.66 | 0.632163 |
Target: 5'- -cGGGCCgcgagcgacucugugCAagcgaAGCCCAGGCUcccGGCCu -3' miRNA: 3'- gcUCCGGa--------------GUg----UCGGGUCCGGu--CCGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 169137 | 0.66 | 0.631188 |
Target: 5'- cCGGGGCCgCGCguggggauGGCCggcgggagGGGCCGGcGCCu -3' miRNA: 3'- -GCUCCGGaGUG--------UCGGg-------UCCGGUC-CGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 78021 | 0.66 | 0.631188 |
Target: 5'- gGuGGCCUaGCAGguaCCUGGGCUcguGGCCg -3' miRNA: 3'- gCuCCGGAgUGUC---GGGUCCGGu--CCGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 168205 | 0.66 | 0.631188 |
Target: 5'- cCGGGGCCgCGCguggggauGGCCggcgggagGGGCCGGcGCCu -3' miRNA: 3'- -GCUCCGGaGUG--------UCGGg-------UCCGGUC-CGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 119039 | 0.66 | 0.631188 |
Target: 5'- ----uCUUCAUccccauccccgGGCUCGGGCCAGGCCc -3' miRNA: 3'- gcuccGGAGUG-----------UCGGGUCCGGUCCGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 117877 | 0.66 | 0.631188 |
Target: 5'- gCGGcGGCCgcggC-CAGCCgCgugAGGCCcaGGGCCa -3' miRNA: 3'- -GCU-CCGGa---GuGUCGG-G---UCCGG--UCCGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 99558 | 0.66 | 0.631188 |
Target: 5'- cCGGGGCagagaUCGgGGUCCAGGagguagaagaCGGGCUu -3' miRNA: 3'- -GCUCCGg----AGUgUCGGGUCCg---------GUCCGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 167273 | 0.66 | 0.631188 |
Target: 5'- cCGGGGCCgCGCguggggauGGCCggcgggagGGGCCGGcGCCu -3' miRNA: 3'- -GCUCCGGaGUG--------UCGGg-------UCCGGUC-CGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 46384 | 0.66 | 0.631188 |
Target: 5'- -cAGGCCcccgucccUCGCcagGGCCgAGaCCAGGCCg -3' miRNA: 3'- gcUCCGG--------AGUG---UCGGgUCcGGUCCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home