Results 81 - 100 of 562 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 6414 | 0.66 | 0.611697 |
Target: 5'- uGGGGUCcCuuuGGCCCAgGGCCauguGGGCCc -3' miRNA: 3'- gCUCCGGaGug-UCGGGU-CCGG----UCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 139571 | 0.66 | 0.611697 |
Target: 5'- uGAGGCCUguaAGCCCaaugAGGCUgcgggGGGCg -3' miRNA: 3'- gCUCCGGAgugUCGGG----UCCGG-----UCCGg -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 50713 | 0.66 | 0.611697 |
Target: 5'- aGAGGCCgggUCAUAGaCgaGGGCCcGGUCg -3' miRNA: 3'- gCUCCGG---AGUGUC-GggUCCGGuCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 92072 | 0.66 | 0.611697 |
Target: 5'- uGGGGCUgcugCugggggGCGGCCC-GGCCugGGGCUg -3' miRNA: 3'- gCUCCGGa---G------UGUCGGGuCCGG--UCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 13057 | 0.66 | 0.611697 |
Target: 5'- aGGcGGCgCUCGguGCCCguccccuccgGGGCCAGcGCg -3' miRNA: 3'- gCU-CCG-GAGUguCGGG----------UCCGGUC-CGg -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 117691 | 0.66 | 0.608777 |
Target: 5'- -aAGGCC-CGCGgaguuuggcacgccGCCCcccaAGGCCGgGGCCg -3' miRNA: 3'- gcUCCGGaGUGU--------------CGGG----UCCGGU-CCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 157532 | 0.66 | 0.601969 |
Target: 5'- aGGGGCC-CugGGCCCcgAGGgC-GGCUc -3' miRNA: 3'- gCUCCGGaGugUCGGG--UCCgGuCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 142142 | 0.66 | 0.601969 |
Target: 5'- aGGGGCC-CugGGCCCcgAGGgC-GGCUc -3' miRNA: 3'- gCUCCGGaGugUCGGG--UCCgGuCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 154454 | 0.66 | 0.601969 |
Target: 5'- aGGGGCC-CugGGCCCcgAGGgC-GGCUc -3' miRNA: 3'- gCUCCGGaGugUCGGG--UCCgGuCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 128761 | 0.66 | 0.601969 |
Target: 5'- cCGAGGCCUUcuucuggaguGUGGCCagcaGGGCCGaagcgugaucGGCCa -3' miRNA: 3'- -GCUCCGGAG----------UGUCGGg---UCCGGU----------CCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 31602 | 0.66 | 0.601969 |
Target: 5'- -cAGGCUgaCACcacgggggaugGGCUCaAGGCCGGGCCc -3' miRNA: 3'- gcUCCGGa-GUG-----------UCGGG-UCCGGUCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 151376 | 0.66 | 0.601969 |
Target: 5'- aGGGGCC-CugGGCCCcgAGGgC-GGCUc -3' miRNA: 3'- gCUCCGGaGugUCGGG--UCCgGuCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 99652 | 0.66 | 0.601969 |
Target: 5'- aGAGGCCgc----CCCccGCCAGGCCc -3' miRNA: 3'- gCUCCGGagugucGGGucCGGUCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 58191 | 0.66 | 0.601969 |
Target: 5'- -cGGGCCUCAgGgacGCCCugcugcGGGCCAGaCCc -3' miRNA: 3'- gcUCCGGAGUgU---CGGG------UCCGGUCcGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 105194 | 0.66 | 0.601969 |
Target: 5'- cCGGGGCCggGgAGCCgGGGgugcCCGGuGCCu -3' miRNA: 3'- -GCUCCGGagUgUCGGgUCC----GGUC-CGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 45049 | 0.66 | 0.601969 |
Target: 5'- -aGGGCCUCGCGGgCCuuGGGCUugaugaccGGUCg -3' miRNA: 3'- gcUCCGGAGUGUCgGG--UCCGGu-------CCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 128391 | 0.66 | 0.601969 |
Target: 5'- -cAGGCaguagcCGCAGUCCAGGCagaacacGGCCa -3' miRNA: 3'- gcUCCGga----GUGUCGGGUCCGgu-----CCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 26862 | 0.66 | 0.601969 |
Target: 5'- uGAGcccCCUCGCAGauCCCAGugaagaagagcGCCGGGUCg -3' miRNA: 3'- gCUCc--GGAGUGUC--GGGUC-----------CGGUCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 145220 | 0.66 | 0.601969 |
Target: 5'- aGGGGCC-CugGGCCCcgAGGgC-GGCUc -3' miRNA: 3'- gCUCCGGaGugUCGGG--UCCgGuCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 148298 | 0.66 | 0.601969 |
Target: 5'- aGGGGCC-CugGGCCCcgAGGgC-GGCUc -3' miRNA: 3'- gCUCCGGaGugUCGGG--UCCgGuCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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