miRNA display CGI


Results 61 - 80 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28973 3' -62.9 NC_006146.1 + 35705 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 51852 0.66 0.621438
Target:  5'- uCGGGGCCUgGCccgAGCCCGGGgaUGGGg- -3'
miRNA:   3'- -GCUCCGGAgUG---UCGGGUCCg-GUCCgg -5'
28973 3' -62.9 NC_006146.1 + 34869 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 35426 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 35333 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 158592 0.66 0.621438
Target:  5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3'
miRNA:   3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5'
28973 3' -62.9 NC_006146.1 + 149357 0.66 0.621438
Target:  5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3'
miRNA:   3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5'
28973 3' -62.9 NC_006146.1 + 34497 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 34311 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 34683 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 80335 0.66 0.620464
Target:  5'- uGGGGCCUUcu--CCCGGGucuucucCCGGGCCc -3'
miRNA:   3'- gCUCCGGAGugucGGGUCC-------GGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 170406 0.66 0.618515
Target:  5'- gGGGGCCUCGgGGgcggagggggggguCCCgcgGGGCCcGGCg -3'
miRNA:   3'- gCUCCGGAGUgUC--------------GGG---UCCGGuCCGg -5'
28973 3' -62.9 NC_006146.1 + 168543 0.66 0.618515
Target:  5'- gGGGGCCUCGgGGgcggagggggggguCCCgcgGGGCCcGGCg -3'
miRNA:   3'- gCUCCGGAGUgUC--------------GGG---UCCGGuCCGg -5'
28973 3' -62.9 NC_006146.1 + 169475 0.66 0.618515
Target:  5'- gGGGGCCUCGgGGgcggagggggggguCCCgcgGGGCCcGGCg -3'
miRNA:   3'- gCUCCGGAGUgUC--------------GGG---UCCGGuCCGg -5'
28973 3' -62.9 NC_006146.1 + 126099 0.66 0.615592
Target:  5'- gCGGGGCCUCagaaacACaccauccagauccccGGCCUGGguuccccgcccGCCGGGCCc -3'
miRNA:   3'- -GCUCCGGAG------UG---------------UCGGGUC-----------CGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 53335 0.66 0.611697
Target:  5'- gGAGGCCcgGCGGCCgCGGGgC-GGCg -3'
miRNA:   3'- gCUCCGGagUGUCGG-GUCCgGuCCGg -5'
28973 3' -62.9 NC_006146.1 + 47651 0.66 0.611697
Target:  5'- --uGGCCgcggCcCGGCCCAGcGCgGcGGCCa -3'
miRNA:   3'- gcuCCGGa---GuGUCGGGUC-CGgU-CCGG- -5'
28973 3' -62.9 NC_006146.1 + 48323 0.66 0.611697
Target:  5'- gGAGGUgCUgGCGGUgguGGGCCAGGCg -3'
miRNA:   3'- gCUCCG-GAgUGUCGgg-UCCGGUCCGg -5'
28973 3' -62.9 NC_006146.1 + 167641 0.66 0.611697
Target:  5'- gCGGGGCCcggCGCGuGCCgGGGgCCcggGGGCg -3'
miRNA:   3'- -GCUCCGGa--GUGU-CGGgUCC-GG---UCCGg -5'
28973 3' -62.9 NC_006146.1 + 13057 0.66 0.611697
Target:  5'- aGGcGGCgCUCGguGCCCguccccuccgGGGCCAGcGCg -3'
miRNA:   3'- gCU-CCG-GAGUguCGGG----------UCCGGUC-CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.