miRNA display CGI


Results 61 - 80 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28973 3' -62.9 NC_006146.1 + 41775 0.73 0.25526
Target:  5'- gGAGGCCcUGC-GCCCGGGCgcccgcucuCAGGCCc -3'
miRNA:   3'- gCUCCGGaGUGuCGGGUCCG---------GUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 40863 0.73 0.26054
Target:  5'- gGAGGCCcggcUCGCGGUCCGGagacggaGCCGgGGCCu -3'
miRNA:   3'- gCUCCGG----AGUGUCGGGUC-------CGGU-CCGG- -5'
28973 3' -62.9 NC_006146.1 + 22945 0.73 0.261132
Target:  5'- --cGGCCUCuCGGUccaCCAGGCC-GGCCg -3'
miRNA:   3'- gcuCCGGAGuGUCG---GGUCCGGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 158820 0.73 0.267114
Target:  5'- -cAGGCa-CACGGCCgGGGCCcGGCCc -3'
miRNA:   3'- gcUCCGgaGUGUCGGgUCCGGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 122517 0.73 0.271366
Target:  5'- gGAGGCCgCGgAGCCCGGGugguucgcggaacuCgAGGCCg -3'
miRNA:   3'- gCUCCGGaGUgUCGGGUCC--------------GgUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 142543 0.73 0.273205
Target:  5'- gGAGGUgguugcggUGCAGCCUAGGCUAGGCg -3'
miRNA:   3'- gCUCCGga------GUGUCGGGUCCGGUCCGg -5'
28973 3' -62.9 NC_006146.1 + 54242 0.73 0.273205
Target:  5'- aGA-GCCUCuggGCGGCCCcGGUCAGGCg -3'
miRNA:   3'- gCUcCGGAG---UGUCGGGuCCGGUCCGg -5'
28973 3' -62.9 NC_006146.1 + 43321 0.73 0.273205
Target:  5'- --cGGCCggCGCGGCCUcGGCCgcccaGGGCCa -3'
miRNA:   3'- gcuCCGGa-GUGUCGGGuCCGG-----UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 115981 0.73 0.273205
Target:  5'- uCGAGGCCUacugcCGGUCCcugaAGGCC-GGCCa -3'
miRNA:   3'- -GCUCCGGAgu---GUCGGG----UCCGGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 132221 0.72 0.279408
Target:  5'- -cAGGCCUUuaagGCAGCUCucgcGGCCGGGCa -3'
miRNA:   3'- gcUCCGGAG----UGUCGGGu---CCGGUCCGg -5'
28973 3' -62.9 NC_006146.1 + 115134 0.72 0.279408
Target:  5'- gGuGGCCUCGCuGCCCcuGGCCc-GCCg -3'
miRNA:   3'- gCuCCGGAGUGuCGGGu-CCGGucCGG- -5'
28973 3' -62.9 NC_006146.1 + 49552 0.72 0.279408
Target:  5'- gGAGGCCaCGCcGgCCAGGCCcagcauGGCCu -3'
miRNA:   3'- gCUCCGGaGUGuCgGGUCCGGu-----CCGG- -5'
28973 3' -62.9 NC_006146.1 + 56529 0.72 0.279408
Target:  5'- --cGGCCaUCAgCAGCUgacgcgucacgCGGGCCAGGCCc -3'
miRNA:   3'- gcuCCGG-AGU-GUCGG-----------GUCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 105140 0.72 0.285722
Target:  5'- gCGAGGCCUCcucuaacgagACcGCCgCAGGUaagAGGCCg -3'
miRNA:   3'- -GCUCCGGAG----------UGuCGG-GUCCGg--UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 41612 0.72 0.292148
Target:  5'- gGGGGCUgguccgCugGGCCCGGGCgCAGaCCa -3'
miRNA:   3'- gCUCCGGa-----GugUCGGGUCCG-GUCcGG- -5'
28973 3' -62.9 NC_006146.1 + 164462 0.72 0.298687
Target:  5'- uGGGGCCcCAUggaccccagGGCCCAcauGGCCcuGGGCCa -3'
miRNA:   3'- gCUCCGGaGUG---------UCGGGU---CCGG--UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 14819 0.72 0.298687
Target:  5'- -cGGGCCggaggagggCACGGUCuCGGGCCcgGGGCCg -3'
miRNA:   3'- gcUCCGGa--------GUGUCGG-GUCCGG--UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 42018 0.72 0.298687
Target:  5'- cCGAGcuacucCCUCugGGCCCGGGCuCAcGCCg -3'
miRNA:   3'- -GCUCc-----GGAGugUCGGGUCCG-GUcCGG- -5'
28973 3' -62.9 NC_006146.1 + 60622 0.72 0.305339
Target:  5'- cCGAGGCCaUCAUGGCagaCGGGgcucugCAGGCCa -3'
miRNA:   3'- -GCUCCGG-AGUGUCGg--GUCCg-----GUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 146766 0.72 0.305339
Target:  5'- aGAGGCCgagUCACgcgacagguacaGGCCCGGuGCCAGccGCCc -3'
miRNA:   3'- gCUCCGG---AGUG------------UCGGGUC-CGGUC--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.