miRNA display CGI


Results 41 - 60 of 562 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28973 3' -62.9 NC_006146.1 + 153305 0.74 0.227514
Target:  5'- -cAGGCacca-GGCCCGGGCCAGGUCg -3'
miRNA:   3'- gcUCCGgagugUCGGGUCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 76877 0.74 0.227514
Target:  5'- uCGGGGCCgu---GCCCcuGCCGGGCCg -3'
miRNA:   3'- -GCUCCGGaguguCGGGucCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 129048 0.74 0.227514
Target:  5'- aCGAGGCCccggUAGCCCcuGGCCAcGGCCc -3'
miRNA:   3'- -GCUCCGGagu-GUCGGGu-CCGGU-CCGG- -5'
28973 3' -62.9 NC_006146.1 + 121341 0.74 0.232851
Target:  5'- uCGAGGCCaugCugGGCCUggccGGCguGGCCu -3'
miRNA:   3'- -GCUCCGGa--GugUCGGGu---CCGguCCGG- -5'
28973 3' -62.9 NC_006146.1 + 43663 0.74 0.238294
Target:  5'- aGGGGCCcggcUCGCAuucGCuCCAGGCCcuccgagaAGGCCa -3'
miRNA:   3'- gCUCCGG----AGUGU---CG-GGUCCGG--------UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 42292 0.73 0.243842
Target:  5'- gGAGGCCagGUAGCCCAGcGCCAGaaaguacaGCCg -3'
miRNA:   3'- gCUCCGGagUGUCGGGUC-CGGUC--------CGG- -5'
28973 3' -62.9 NC_006146.1 + 70000 0.73 0.243842
Target:  5'- uCGGGGaCCcCACGGCCgAGacCCAGGCCg -3'
miRNA:   3'- -GCUCC-GGaGUGUCGGgUCc-GGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 3800 0.73 0.249497
Target:  5'- uGuGGCC-CACAGUCaggucuGGGUCAGGCCa -3'
miRNA:   3'- gCuCCGGaGUGUCGGg-----UCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 12711 0.73 0.249497
Target:  5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3'
miRNA:   3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5'
28973 3' -62.9 NC_006146.1 + 18868 0.73 0.249497
Target:  5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3'
miRNA:   3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5'
28973 3' -62.9 NC_006146.1 + 25023 0.73 0.249497
Target:  5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3'
miRNA:   3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5'
28973 3' -62.9 NC_006146.1 + 168500 0.73 0.249497
Target:  5'- gGAGGCC-CGCGGagaggCCguguguggAGGCCGGGCCu -3'
miRNA:   3'- gCUCCGGaGUGUCg----GG--------UCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 28101 0.73 0.249497
Target:  5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3'
miRNA:   3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5'
28973 3' -62.9 NC_006146.1 + 167568 0.73 0.249497
Target:  5'- gGAGGCC-CGCGGagaggCCguguguggAGGCCGGGCCu -3'
miRNA:   3'- gCUCCGGaGUGUCg----GG--------UCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 69862 0.73 0.249497
Target:  5'- gGAGGUCgggCGuagaGGCCCAGGuCCAcGGCCg -3'
miRNA:   3'- gCUCCGGa--GUg---UCGGGUCC-GGU-CCGG- -5'
28973 3' -62.9 NC_006146.1 + 169432 0.73 0.249497
Target:  5'- gGAGGCC-CGCGGagaggCCguguguggAGGCCGGGCCu -3'
miRNA:   3'- gCUCCGGaGUGUCg----GG--------UCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 170363 0.73 0.249497
Target:  5'- gGAGGCC-CGCGGagaggCCguguguggAGGCCGGGCCu -3'
miRNA:   3'- gCUCCGGaGUGUCg----GG--------UCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 15790 0.73 0.249497
Target:  5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3'
miRNA:   3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5'
28973 3' -62.9 NC_006146.1 + 32022 0.73 0.254679
Target:  5'- aGGGGCCUCGggacgaggcgcUGGCCCAGGucaugacCCGGGCg -3'
miRNA:   3'- gCUCCGGAGU-----------GUCGGGUCC-------GGUCCGg -5'
28973 3' -62.9 NC_006146.1 + 155860 0.73 0.25526
Target:  5'- uCGcAGGCCcgGCgGGCCCuGGCCAGGCg -3'
miRNA:   3'- -GC-UCCGGagUG-UCGGGuCCGGUCCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.