miRNA display CGI


Results 41 - 60 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28973 3' -62.9 NC_006146.1 + 34683 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 33475 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 33568 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 35147 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 34218 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 34590 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 159541 0.66 0.621438
Target:  5'- ---uGCCUgacgCGCAGCgCCuGcGCCAGGCCc -3'
miRNA:   3'- gcucCGGA----GUGUCG-GGuC-CGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 103675 0.66 0.621438
Target:  5'- cCGuGGCUUC-CuguGCCUggccGGCCAGGCg -3'
miRNA:   3'- -GCuCCGGAGuGu--CGGGu---CCGGUCCGg -5'
28973 3' -62.9 NC_006146.1 + 125956 0.66 0.621438
Target:  5'- cCGGGGCCUCcccGCGcCCCuGGCCacgagAGGUUc -3'
miRNA:   3'- -GCUCCGGAG---UGUcGGGuCCGG-----UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 35612 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 158592 0.66 0.621438
Target:  5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3'
miRNA:   3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5'
28973 3' -62.9 NC_006146.1 + 55172 0.66 0.621438
Target:  5'- gGGGGUgacCGCGuCCCAGGCUGcGGCCg -3'
miRNA:   3'- gCUCCGga-GUGUcGGGUCCGGU-CCGG- -5'
28973 3' -62.9 NC_006146.1 + 155513 0.66 0.621438
Target:  5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3'
miRNA:   3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5'
28973 3' -62.9 NC_006146.1 + 51852 0.66 0.621438
Target:  5'- uCGGGGCCUgGCccgAGCCCGGGgaUGGGg- -3'
miRNA:   3'- -GCUCCGGAgUG---UCGGGUCCg-GUCCgg -5'
28973 3' -62.9 NC_006146.1 + 72574 0.66 0.621438
Target:  5'- -cGGGCCgcgCcCGGCCCcGuGCCAgacGGCCa -3'
miRNA:   3'- gcUCCGGa--GuGUCGGGuC-CGGU---CCGG- -5'
28973 3' -62.9 NC_006146.1 + 35705 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 34125 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 143201 0.66 0.621438
Target:  5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3'
miRNA:   3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5'
28973 3' -62.9 NC_006146.1 + 116037 0.66 0.621438
Target:  5'- -aAGGCCUcCACGGCCCGcuGCUGGGg- -3'
miRNA:   3'- gcUCCGGA-GUGUCGGGUc-CGGUCCgg -5'
28973 3' -62.9 NC_006146.1 + 34311 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.