miRNA display CGI


Results 41 - 60 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28973 3' -62.9 NC_006146.1 + 31671 0.66 0.601969
Target:  5'- -cAGGCaa-ACAGCCCAGGgaCCAGGg- -3'
miRNA:   3'- gcUCCGgagUGUCGGGUCC--GGUCCgg -5'
28973 3' -62.9 NC_006146.1 + 26978 0.66 0.591293
Target:  5'- --uGGUaaaugUCAgGGCCCAGggggguucgcguuGCCAGGCCa -3'
miRNA:   3'- gcuCCGg----AGUgUCGGGUC-------------CGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 168543 0.66 0.618515
Target:  5'- gGGGGCCUCGgGGgcggagggggggguCCCgcgGGGCCcGGCg -3'
miRNA:   3'- gCUCCGGAGUgUC--------------GGG---UCCGGuCCGg -5'
28973 3' -62.9 NC_006146.1 + 148143 0.66 0.592262
Target:  5'- -uGGGCUucgugcuggUCAgGGCCCGGGUCuucucuacGGCCa -3'
miRNA:   3'- gcUCCGG---------AGUgUCGGGUCCGGu-------CCGG- -5'
28973 3' -62.9 NC_006146.1 + 45049 0.66 0.601969
Target:  5'- -aGGGCCUCGCGGgCCuuGGGCUugaugaccGGUCg -3'
miRNA:   3'- gcUCCGGAGUGUCgGG--UCCGGu-------CCGG- -5'
28973 3' -62.9 NC_006146.1 + 137015 0.66 0.591293
Target:  5'- gGuAGGCCgggCACAcCCCggggaggAGGCCGGGUg -3'
miRNA:   3'- gC-UCCGGa--GUGUcGGG-------UCCGGUCCGg -5'
28973 3' -62.9 NC_006146.1 + 69472 0.66 0.631188
Target:  5'- --cGGCUuaACcaggauGCCCugcauGGCCAGGCCc -3'
miRNA:   3'- gcuCCGGagUGu-----CGGGu----CCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 92874 0.66 0.621438
Target:  5'- --cGGCCaCG-AGCCCAGGUaccugcUAGGCCa -3'
miRNA:   3'- gcuCCGGaGUgUCGGGUCCG------GUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 75160 0.66 0.600998
Target:  5'- cCGGGGCCaaCAcCAGCCCcccccacuGGGCauuuuguUAGGCCc -3'
miRNA:   3'- -GCUCCGGa-GU-GUCGGG--------UCCG-------GUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 167641 0.66 0.611697
Target:  5'- gCGGGGCCcggCGCGuGCCgGGGgCCcggGGGCg -3'
miRNA:   3'- -GCUCCGGa--GUGU-CGGgUCC-GG---UCCGg -5'
28973 3' -62.9 NC_006146.1 + 102862 0.66 0.592262
Target:  5'- aGGGcaGCCgcCACcuGGUCguGGCCGGGCCc -3'
miRNA:   3'- gCUC--CGGa-GUG--UCGGguCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 62722 0.66 0.592262
Target:  5'- --cGGCCgugUACAuGCCCAGgauaGCCGGaGCCc -3'
miRNA:   3'- gcuCCGGa--GUGU-CGGGUC----CGGUC-CGG- -5'
28973 3' -62.9 NC_006146.1 + 23901 0.66 0.591293
Target:  5'- --uGGUaaaugUCAgGGCCCAGggggguucgcguuGCCAGGCCa -3'
miRNA:   3'- gcuCCGg----AGUgUCGGGUC-------------CGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 20823 0.66 0.591293
Target:  5'- --uGGUaaaugUCAgGGCCCAGggggguucgcguuGCCAGGCCa -3'
miRNA:   3'- gcuCCGg----AGUgUCGGGUC-------------CGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 51852 0.66 0.621438
Target:  5'- uCGGGGCCUgGCccgAGCCCGGGgaUGGGg- -3'
miRNA:   3'- -GCUCCGGAgUG---UCGGGUCCg-GUCCgg -5'
28973 3' -62.9 NC_006146.1 + 102559 0.66 0.611697
Target:  5'- aGAGGCgUC-CAGCagCAGGuCCGaGCCg -3'
miRNA:   3'- gCUCCGgAGuGUCGg-GUCC-GGUcCGG- -5'
28973 3' -62.9 NC_006146.1 + 58191 0.66 0.601969
Target:  5'- -cGGGCCUCAgGgacGCCCugcugcGGGCCAGaCCc -3'
miRNA:   3'- gcUCCGGAGUgU---CGGG------UCCGGUCcGG- -5'
28973 3' -62.9 NC_006146.1 + 151376 0.66 0.601969
Target:  5'- aGGGGCC-CugGGCCCcgAGGgC-GGCUc -3'
miRNA:   3'- gCUCCGGaGugUCGGG--UCCgGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 31602 0.66 0.601969
Target:  5'- -cAGGCUgaCACcacgggggaugGGCUCaAGGCCGGGCCc -3'
miRNA:   3'- gcUCCGGa-GUG-----------UCGGG-UCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 170406 0.66 0.618515
Target:  5'- gGGGGCCUCGgGGgcggagggggggguCCCgcgGGGCCcGGCg -3'
miRNA:   3'- gCUCCGGAGUgUC--------------GGG---UCCGGuCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.