miRNA display CGI


Results 21 - 40 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28973 3' -62.9 NC_006146.1 + 168205 0.66 0.631188
Target:  5'- cCGGGGCCgCGCguggggauGGCCggcgggagGGGCCGGcGCCu -3'
miRNA:   3'- -GCUCCGGaGUG--------UCGGg-------UCCGGUC-CGG- -5'
28973 3' -62.9 NC_006146.1 + 55172 0.66 0.621438
Target:  5'- gGGGGUgacCGCGuCCCAGGCUGcGGCCg -3'
miRNA:   3'- gCUCCGga-GUGUcGGGUCCGGU-CCGG- -5'
28973 3' -62.9 NC_006146.1 + 58191 0.66 0.601969
Target:  5'- -cGGGCCUCAgGgacGCCCugcugcGGGCCAGaCCc -3'
miRNA:   3'- gcUCCGGAGUgU---CGGG------UCCGGUCcGG- -5'
28973 3' -62.9 NC_006146.1 + 82031 0.66 0.592262
Target:  5'- gGAGuugcaGCCacaACAGcCCCAGGCCccGCCg -3'
miRNA:   3'- gCUC-----CGGag-UGUC-GGGUCCGGucCGG- -5'
28973 3' -62.9 NC_006146.1 + 102559 0.66 0.611697
Target:  5'- aGAGGCgUC-CAGCagCAGGuCCGaGCCg -3'
miRNA:   3'- gCUCCGgAGuGUCGg-GUCC-GGUcCGG- -5'
28973 3' -62.9 NC_006146.1 + 116037 0.66 0.621438
Target:  5'- -aAGGCCUcCACGGCCCGcuGCUGGGg- -3'
miRNA:   3'- gcUCCGGA-GUGUCGGGUc-CGGUCCgg -5'
28973 3' -62.9 NC_006146.1 + 169137 0.66 0.631188
Target:  5'- cCGGGGCCgCGCguggggauGGCCggcgggagGGGCCGGcGCCu -3'
miRNA:   3'- -GCUCCGGaGUG--------UCGGg-------UCCGGUC-CGG- -5'
28973 3' -62.9 NC_006146.1 + 99558 0.66 0.631188
Target:  5'- cCGGGGCagagaUCGgGGUCCAGGagguagaagaCGGGCUu -3'
miRNA:   3'- -GCUCCGg----AGUgUCGGGUCCg---------GUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 147113 0.66 0.592262
Target:  5'- uGGGGCUcaGCGGgcCCCAGacGCgCAGGCCg -3'
miRNA:   3'- gCUCCGGagUGUC--GGGUC--CG-GUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 167273 0.66 0.631188
Target:  5'- cCGGGGCCgCGCguggggauGGCCggcgggagGGGCCGGcGCCu -3'
miRNA:   3'- -GCUCCGGaGUG--------UCGGg-------UCCGGUC-CGG- -5'
28973 3' -62.9 NC_006146.1 + 169475 0.66 0.618515
Target:  5'- gGGGGCCUCGgGGgcggagggggggguCCCgcgGGGCCcGGCg -3'
miRNA:   3'- gCUCCGGAGUgUC--------------GGG---UCCGGuCCGg -5'
28973 3' -62.9 NC_006146.1 + 50713 0.66 0.611697
Target:  5'- aGAGGCCgggUCAUAGaCgaGGGCCcGGUCg -3'
miRNA:   3'- gCUCCGG---AGUGUC-GggUCCGGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 99652 0.66 0.601969
Target:  5'- aGAGGCCgc----CCCccGCCAGGCCc -3'
miRNA:   3'- gCUCCGGagugucGGGucCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 102862 0.66 0.592262
Target:  5'- aGGGcaGCCgcCACcuGGUCguGGCCGGGCCc -3'
miRNA:   3'- gCUC--CGGa-GUG--UCGGguCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 14667 0.66 0.591293
Target:  5'- --uGGUaaaugUCAgGGCCCAGggggguucgcguuGCCAGGCCa -3'
miRNA:   3'- gcuCCGg----AGUgUCGGGUC-------------CGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 48323 0.66 0.611697
Target:  5'- gGAGGUgCUgGCGGUgguGGGCCAGGCg -3'
miRNA:   3'- gCUCCG-GAgUGUCGgg-UCCGGUCCGg -5'
28973 3' -62.9 NC_006146.1 + 47651 0.66 0.611697
Target:  5'- --uGGCCgcggCcCGGCCCAGcGCgGcGGCCa -3'
miRNA:   3'- gcuCCGGa---GuGUCGGGUC-CGgU-CCGG- -5'
28973 3' -62.9 NC_006146.1 + 125938 0.66 0.631188
Target:  5'- aCGAGGUCUUGCGGagCCAGGagaagGGGUCu -3'
miRNA:   3'- -GCUCCGGAGUGUCg-GGUCCgg---UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 53867 0.66 0.630212
Target:  5'- gCGAcgcuGGCCcucagCGCccccguagggcguAGCCCAGGUCcaGGGCCc -3'
miRNA:   3'- -GCU----CCGGa----GUG-------------UCGGGUCCGG--UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 165945 0.66 0.640937
Target:  5'- gGAGGCuCUCGUGGCCCcugguccccgGGGCaCAgagcacGGCCa -3'
miRNA:   3'- gCUCCG-GAGUGUCGGG----------UCCG-GU------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.