miRNA display CGI


Results 21 - 40 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28973 3' -62.9 NC_006146.1 + 3486 0.68 0.497548
Target:  5'- cCGGGaCCcCGCgcuGGCCCccGCCAGGCCc -3'
miRNA:   3'- -GCUCcGGaGUG---UCGGGucCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 3528 0.69 0.426935
Target:  5'- uCGGGaGCCcccuCAGCCCccGGCCGGcGCCg -3'
miRNA:   3'- -GCUC-CGGagu-GUCGGGu-CCGGUC-CGG- -5'
28973 3' -62.9 NC_006146.1 + 3742 0.69 0.426935
Target:  5'- gCGuGGCCcuuCAGCCCGGGgUGGGUCc -3'
miRNA:   3'- -GCuCCGGaguGUCGGGUCCgGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 3800 0.73 0.249497
Target:  5'- uGuGGCC-CACAGUCaggucuGGGUCAGGCCa -3'
miRNA:   3'- gCuCCGGaGUGUCGGg-----UCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 4365 0.7 0.385935
Target:  5'- aCGuGGCC--ACGGCCCcgcGGGCucccCAGGCCg -3'
miRNA:   3'- -GCuCCGGagUGUCGGG---UCCG----GUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 6414 0.66 0.611697
Target:  5'- uGGGGUCcCuuuGGCCCAgGGCCauguGGGCCc -3'
miRNA:   3'- gCUCCGGaGug-UCGGGU-CCGG----UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 7304 0.68 0.487513
Target:  5'- aGAGGCCUCAacugggcauuGCCCAuGCCAGugacuucccccacGCCc -3'
miRNA:   3'- gCUCCGGAGUgu--------CGGGUcCGGUC-------------CGG- -5'
28973 3' -62.9 NC_006146.1 + 8510 0.66 0.631188
Target:  5'- --uGGCC-CACcggGGuCCCGGGCgCGGGCg -3'
miRNA:   3'- gcuCCGGaGUG---UC-GGGUCCG-GUCCGg -5'
28973 3' -62.9 NC_006146.1 + 8558 0.69 0.452741
Target:  5'- -aAGGCgCUCauagcuGCAGCCCGGGCUgcagcaccAGGCa -3'
miRNA:   3'- gcUCCG-GAG------UGUCGGGUCCGG--------UCCGg -5'
28973 3' -62.9 NC_006146.1 + 9482 0.71 0.325971
Target:  5'- gCGGGGCCaCACccGCCU-GGCaCAGGCCu -3'
miRNA:   3'- -GCUCCGGaGUGu-CGGGuCCG-GUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 10206 0.66 0.631188
Target:  5'- aCGAGacggaccuGCCUCuacCGGCCCuGGUCAuGuGCCg -3'
miRNA:   3'- -GCUC--------CGGAGu--GUCGGGuCCGGU-C-CGG- -5'
28973 3' -62.9 NC_006146.1 + 11419 0.67 0.582581
Target:  5'- aGA-GCCU-GCAGgaCCAGGCCAagguGGCCa -3'
miRNA:   3'- gCUcCGGAgUGUCg-GGUCCGGU----CCGG- -5'
28973 3' -62.9 NC_006146.1 + 12308 0.68 0.479374
Target:  5'- aGucGCCUCAa--CCCGGGCUucAGGCCc -3'
miRNA:   3'- gCucCGGAGUgucGGGUCCGG--UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 12459 0.67 0.534773
Target:  5'- cCGGGGCCUUucaGGCCC---UCGGGCCc -3'
miRNA:   3'- -GCUCCGGAGug-UCGGGuccGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 12611 1.11 0.000537
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 12711 0.73 0.249497
Target:  5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3'
miRNA:   3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5'
28973 3' -62.9 NC_006146.1 + 12721 0.69 0.46153
Target:  5'- gGGGGuCCUgACGGCCaaggAGGCCAaGGUg -3'
miRNA:   3'- gCUCC-GGAgUGUCGGg---UCCGGU-CCGg -5'
28973 3' -62.9 NC_006146.1 + 12866 0.69 0.418529
Target:  5'- gCGAGGCUggGUGGCUgggCAGGCCGGGUCu -3'
miRNA:   3'- -GCUCCGGagUGUCGG---GUCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 13057 0.66 0.611697
Target:  5'- aGGcGGCgCUCGguGCCCguccccuccgGGGCCAGcGCg -3'
miRNA:   3'- gCU-CCG-GAGUguCGGG----------UCCGGUC-CGg -5'
28973 3' -62.9 NC_006146.1 + 13385 0.68 0.497548
Target:  5'- cCGuGGUCUgCGCGGCCaCGGacugccucaGCCAGGUCu -3'
miRNA:   3'- -GCuCCGGA-GUGUCGG-GUC---------CGGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.