miRNA display CGI


Results 21 - 40 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28973 3' -62.9 NC_006146.1 + 167641 0.66 0.611697
Target:  5'- gCGGGGCCcggCGCGuGCCgGGGgCCcggGGGCg -3'
miRNA:   3'- -GCUCCGGa--GUGU-CGGgUCC-GG---UCCGg -5'
28973 3' -62.9 NC_006146.1 + 167568 0.73 0.249497
Target:  5'- gGAGGCC-CGCGGagaggCCguguguggAGGCCGGGCCu -3'
miRNA:   3'- gCUCCGGaGUGUCg----GG--------UCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 167408 0.7 0.410224
Target:  5'- cCGGGGCCUgGCGGgggCCAGcGCgGGGUCc -3'
miRNA:   3'- -GCUCCGGAgUGUCg--GGUC-CGgUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 167273 0.66 0.631188
Target:  5'- cCGGGGCCgCGCguggggauGGCCggcgggagGGGCCGGcGCCu -3'
miRNA:   3'- -GCUCCGGaGUG--------UCGGg-------UCCGGUC-CGG- -5'
28973 3' -62.9 NC_006146.1 + 167183 0.7 0.370279
Target:  5'- gGAGGCCggCGCGcGCCCGGGgucCCGGGg- -3'
miRNA:   3'- gCUCCGGa-GUGU-CGGGUCC---GGUCCgg -5'
28973 3' -62.9 NC_006146.1 + 167155 0.67 0.582581
Target:  5'- aGGGGaCC-CAC--CCCGGGCUgaaGGGCCa -3'
miRNA:   3'- gCUCC-GGaGUGucGGGUCCGG---UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 167010 0.68 0.470409
Target:  5'- gGGGGCCUCGuCGGU--GGGCCucGCCg -3'
miRNA:   3'- gCUCCGGAGU-GUCGggUCCGGucCGG- -5'
28973 3' -62.9 NC_006146.1 + 166746 0.69 0.441453
Target:  5'- gGAGGCCgagccgUACGucagcuucacGCCCAGGUCAcgcgcguagucgcuGGCCg -3'
miRNA:   3'- gCUCCGGa-----GUGU----------CGGGUCCGGU--------------CCGG- -5'
28973 3' -62.9 NC_006146.1 + 166530 0.68 0.506751
Target:  5'- --cGGCCUgGgGaGCCCgcgGGGCCGuGGCCa -3'
miRNA:   3'- gcuCCGGAgUgU-CGGG---UCCGGU-CCGG- -5'
28973 3' -62.9 NC_006146.1 + 165945 0.66 0.640937
Target:  5'- gGAGGCuCUCGUGGCCCcugguccccgGGGCaCAgagcacGGCCa -3'
miRNA:   3'- gCUCCG-GAGUGUCGGG----------UCCG-GU------CCGG- -5'
28973 3' -62.9 NC_006146.1 + 165680 0.69 0.448381
Target:  5'- cCGAGGCCggcaaggaccugCACcccuagcucccccaGGCCCAGGgaaaacgucUCGGGCCu -3'
miRNA:   3'- -GCUCCGGa-----------GUG--------------UCGGGUCC---------GGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 164462 0.72 0.298687
Target:  5'- uGGGGCCcCAUggaccccagGGCCCAcauGGCCcuGGGCCa -3'
miRNA:   3'- gCUCCGGaGUG---------UCGGGU---CCGG--UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 163776 0.71 0.325267
Target:  5'- aGcAGGCCaUCcucuaguuaguauGCAGCCUGGGCCuuggcGGGCCa -3'
miRNA:   3'- gC-UCCGG-AG-------------UGUCGGGUCCGG-----UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 160666 0.67 0.553756
Target:  5'- gGAGGCCuUCAgGGCC--GGCacaugaccaGGGCCg -3'
miRNA:   3'- gCUCCGG-AGUgUCGGguCCGg--------UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 159892 0.7 0.410224
Target:  5'- aGAgGGCCUCGaGGCCgGGGCCcucgaagaugggGGGCa -3'
miRNA:   3'- gCU-CCGGAGUgUCGGgUCCGG------------UCCGg -5'
28973 3' -62.9 NC_006146.1 + 159541 0.66 0.621438
Target:  5'- ---uGCCUgacgCGCAGCgCCuGcGCCAGGCCc -3'
miRNA:   3'- gcucCGGA----GUGUCG-GGuC-CGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 159277 0.7 0.378052
Target:  5'- aCGcGGGCCUCGgGGCCCucgcagucGGCaaacagGGGCCa -3'
miRNA:   3'- -GC-UCCGGAGUgUCGGGu-------CCGg-----UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 158820 0.73 0.267114
Target:  5'- -cAGGCa-CACGGCCgGGGCCcGGCCc -3'
miRNA:   3'- gcUCCGgaGUGUCGGgUCCGGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 158592 0.66 0.621438
Target:  5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3'
miRNA:   3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5'
28973 3' -62.9 NC_006146.1 + 158306 0.72 0.305339
Target:  5'- uGAGGCCUCGaGGgCCGGGUUcuGGGCUu -3'
miRNA:   3'- gCUCCGGAGUgUCgGGUCCGG--UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.