miRNA display CGI


Results 41 - 60 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28973 3' -62.9 NC_006146.1 + 158267 0.7 0.370279
Target:  5'- uGGGGCCUgGCcgGGUCUAagguGGCCuGGCCu -3'
miRNA:   3'- gCUCCGGAgUG--UCGGGU----CCGGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 158180 0.69 0.46153
Target:  5'- --uGGUCUCGCuugcuGGCCCcaauGGCCgcGGGCCu -3'
miRNA:   3'- gcuCCGGAGUG-----UCGGGu---CCGG--UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 157781 0.66 0.591293
Target:  5'- -uGGGCCcgGgAGCCCccguccacaaacaGGGCCAGGUCc -3'
miRNA:   3'- gcUCCGGagUgUCGGG-------------UCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 157724 0.8 0.089979
Target:  5'- gCGAGGCCggGCAGgCCGGGC-AGGCCg -3'
miRNA:   3'- -GCUCCGGagUGUCgGGUCCGgUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 157562 0.69 0.426935
Target:  5'- gGuGGCCUC-C-GCgUAGGCCGcGGCCg -3'
miRNA:   3'- gCuCCGGAGuGuCGgGUCCGGU-CCGG- -5'
28973 3' -62.9 NC_006146.1 + 157532 0.66 0.601969
Target:  5'- aGGGGCC-CugGGCCCcgAGGgC-GGCUc -3'
miRNA:   3'- gCUCCGGaGugUCGGG--UCCgGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 157494 0.67 0.553756
Target:  5'- -cGGGCCUUGCAGaCCuGGCUgAGGCa -3'
miRNA:   3'- gcUCCGGAGUGUCgGGuCCGG-UCCGg -5'
28973 3' -62.9 NC_006146.1 + 157441 0.68 0.525368
Target:  5'- --uGGCCUCugGGgccaCCCGGGCUgccgGGGUCc -3'
miRNA:   3'- gcuCCGGAGugUC----GGGUCCGG----UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 157339 0.72 0.31898
Target:  5'- --cGGCCUgcuugCGCAGCCCGGcGCCcGGCg -3'
miRNA:   3'- gcuCCGGA-----GUGUCGGGUC-CGGuCCGg -5'
28973 3' -62.9 NC_006146.1 + 156356 0.66 0.630212
Target:  5'- aGcGGCCcaGCAGCuCCAGGgcccgguCCAGGCUc -3'
miRNA:   3'- gCuCCGGagUGUCG-GGUCC-------GGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 156062 0.68 0.516026
Target:  5'- --cGGCCUCccGCGGcCCCGGGCCcgAGaCCg -3'
miRNA:   3'- gcuCCGGAG--UGUC-GGGUCCGG--UCcGG- -5'
28973 3' -62.9 NC_006146.1 + 156027 0.67 0.572933
Target:  5'- uGGGGCCUCGgagGGCCUggaGGGCUAGaGUg -3'
miRNA:   3'- gCUCCGGAGUg--UCGGG---UCCGGUC-CGg -5'
28973 3' -62.9 NC_006146.1 + 155870 0.72 0.31898
Target:  5'- cCGAGaCCUgGgGGCCCGGGCCuggaAGGUCc -3'
miRNA:   3'- -GCUCcGGAgUgUCGGGUCCGG----UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 155860 0.73 0.25526
Target:  5'- uCGcAGGCCcgGCgGGCCCuGGCCAGGCg -3'
miRNA:   3'- -GC-UCCGGagUG-UCGGGuCCGGUCCGg -5'
28973 3' -62.9 NC_006146.1 + 155513 0.66 0.621438
Target:  5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3'
miRNA:   3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5'
28973 3' -62.9 NC_006146.1 + 155453 0.68 0.488421
Target:  5'- -aGGGUCUCGCucugcuGCgCCAGgcaggacugcaGCCGGGCCa -3'
miRNA:   3'- gcUCCGGAGUGu-----CG-GGUC-----------CGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 155227 0.72 0.305339
Target:  5'- uGAGGCCUCGaGGgCCGGGUUcuGGGCUu -3'
miRNA:   3'- gCUCCGGAGUgUCgGGUCCGG--UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 155188 0.7 0.370279
Target:  5'- uGGGGCCUgGCcgGGUCUAagguGGCCuGGCCu -3'
miRNA:   3'- gCUCCGGAgUG--UCGGGU----CCGGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 155142 0.77 0.144451
Target:  5'- cCGcGGCgUCGCAGCagCGGGCCAgGGCCa -3'
miRNA:   3'- -GCuCCGgAGUGUCGg-GUCCGGU-CCGG- -5'
28973 3' -62.9 NC_006146.1 + 155101 0.69 0.46153
Target:  5'- --uGGUCUCGCuugcuGGCCCcaauGGCCgcGGGCCu -3'
miRNA:   3'- gcuCCGGAGUG-----UCGGGu---CCGG--UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.