miRNA display CGI


Results 41 - 60 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28973 3' -62.9 NC_006146.1 + 24924 1.1 0.000681
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCc -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 28001 1.11 0.000537
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 21846 1.11 0.000537
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 18768 1.11 0.000537
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 15690 1.11 0.000537
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 78705 0.77 0.147667
Target:  5'- -cAGGCCgggCccgccccccagcaGCAGcCCCAGGCCGGGCCc -3'
miRNA:   3'- gcUCCGGa--G-------------UGUC-GGGUCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 78765 0.77 0.147667
Target:  5'- -cAGGCCgggCccgccccccagcaGCAGcCCCAGGCCGGGCCc -3'
miRNA:   3'- gcUCCGGa--G-------------UGUC-GGGUCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 28101 0.73 0.249497
Target:  5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3'
miRNA:   3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5'
28973 3' -62.9 NC_006146.1 + 25023 0.73 0.249497
Target:  5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3'
miRNA:   3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5'
28973 3' -62.9 NC_006146.1 + 18868 0.73 0.249497
Target:  5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3'
miRNA:   3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5'
28973 3' -62.9 NC_006146.1 + 15790 0.73 0.249497
Target:  5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3'
miRNA:   3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5'
28973 3' -62.9 NC_006146.1 + 12711 0.73 0.249497
Target:  5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3'
miRNA:   3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5'
28973 3' -62.9 NC_006146.1 + 69862 0.73 0.249497
Target:  5'- gGAGGUCgggCGuagaGGCCCAGGuCCAcGGCCg -3'
miRNA:   3'- gCUCCGGa--GUg---UCGGGUCC-GGU-CCGG- -5'
28973 3' -62.9 NC_006146.1 + 3800 0.73 0.249497
Target:  5'- uGuGGCC-CACAGUCaggucuGGGUCAGGCCa -3'
miRNA:   3'- gCuCCGGaGUGUCGGg-----UCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 153305 0.74 0.227514
Target:  5'- -cAGGCacca-GGCCCGGGCCAGGUCg -3'
miRNA:   3'- gcUCCGgagugUCGGGUCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 98334 0.74 0.22228
Target:  5'- aCGGGGCCgggCGCGGCCCGucccGGuCCAGGagaCa -3'
miRNA:   3'- -GCUCCGGa--GUGUCGGGU----CC-GGUCCg--G- -5'
28973 3' -62.9 NC_006146.1 + 61933 0.74 0.21715
Target:  5'- cCGAGGCCuUCACgGGCCCggugaucaAGGCUcaggacacggGGGCCg -3'
miRNA:   3'- -GCUCCGG-AGUG-UCGGG--------UCCGG----------UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 113673 0.76 0.159249
Target:  5'- aGAGGUggCUCG-GGCCCGGGCCcGGCCu -3'
miRNA:   3'- gCUCCG--GAGUgUCGGGUCCGGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 51976 0.77 0.148028
Target:  5'- gGAGGUCUC-CGGCaugCGGGCCGGGCg -3'
miRNA:   3'- gCUCCGGAGuGUCGg--GUCCGGUCCGg -5'
28973 3' -62.9 NC_006146.1 + 78883 0.77 0.147667
Target:  5'- -cAGGCCgggCccgccccccagcaGCAGcCCCAGGCCGGGCCc -3'
miRNA:   3'- gcUCCGGa--G-------------UGUC-GGGUCCGGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.