miRNA display CGI


Results 41 - 60 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28973 3' -62.9 NC_006146.1 + 13421 0.7 0.393925
Target:  5'- aGGGuGCCUCcCcgGGuCCCAGGCCAG-CCg -3'
miRNA:   3'- gCUC-CGGAGuG--UC-GGGUCCGGUCcGG- -5'
28973 3' -62.9 NC_006146.1 + 13450 0.67 0.534773
Target:  5'- gGAGGgacCCcgGCAGCCCGgguGGCCccagAGGCCa -3'
miRNA:   3'- gCUCC---GGagUGUCGGGU---CCGG----UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 13711 0.71 0.355062
Target:  5'- --cGGCCUCuCGGguccaCCAGGCC-GGCCg -3'
miRNA:   3'- gcuCCGGAGuGUCg----GGUCCGGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 14343 0.7 0.410224
Target:  5'- -aGGGCCgUUGCGGCCCugcuggugGGGUCGGGUCc -3'
miRNA:   3'- gcUCCGG-AGUGUCGGG--------UCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 14367 0.67 0.582581
Target:  5'- -cGGGCCUgucagACAGCCCugucuaGGGCCGGGa- -3'
miRNA:   3'- gcUCCGGAg----UGUCGGG------UCCGGUCCgg -5'
28973 3' -62.9 NC_006146.1 + 14527 0.69 0.452741
Target:  5'- uGGGGCUggAgAGCCUGGaCCGGGCCc -3'
miRNA:   3'- gCUCCGGagUgUCGGGUCcGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 14667 0.66 0.591293
Target:  5'- --uGGUaaaugUCAgGGCCCAGggggguucgcguuGCCAGGCCa -3'
miRNA:   3'- gcuCCGg----AGUgUCGGGUC-------------CGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 14758 0.7 0.378052
Target:  5'- aCGAGGUCagGCAGgCgGGGCuCGGGCa -3'
miRNA:   3'- -GCUCCGGagUGUCgGgUCCG-GUCCGg -5'
28973 3' -62.9 NC_006146.1 + 14819 0.72 0.298687
Target:  5'- -cGGGCCggaggagggCACGGUCuCGGGCCcgGGGCCg -3'
miRNA:   3'- gcUCCGGa--------GUGUCGG-GUCCGG--UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 14854 0.68 0.505827
Target:  5'- aGGGGucuucuaCCUCACucuAGCCCuccAGGCCcuccgAGGCCc -3'
miRNA:   3'- gCUCC-------GGAGUG---UCGGG---UCCGG-----UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 15024 0.68 0.488421
Target:  5'- --cGGaCCUUccaGGCCCGGGCCcccaggucucGGGCCa -3'
miRNA:   3'- gcuCC-GGAGug-UCGGGUCCGG----------UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 15034 0.69 0.418529
Target:  5'- gGGGcGCCUgGCcagGGCCC--GCCGGGCCu -3'
miRNA:   3'- gCUC-CGGAgUG---UCGGGucCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 15387 0.68 0.479374
Target:  5'- aGucGCCUCAa--CCCGGGCUucAGGCCc -3'
miRNA:   3'- gCucCGGAGUgucGGGUCCGG--UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 15538 0.67 0.534773
Target:  5'- cCGGGGCCUUucaGGCCC---UCGGGCCc -3'
miRNA:   3'- -GCUCCGGAGug-UCGGGuccGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 15690 1.11 0.000537
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 15790 0.73 0.249497
Target:  5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3'
miRNA:   3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5'
28973 3' -62.9 NC_006146.1 + 15889 0.68 0.494802
Target:  5'- gGAGGgCUCGCuGGCCUcgAGccagcaacuucuguGCCGGGCCc -3'
miRNA:   3'- gCUCCgGAGUG-UCGGG--UC--------------CGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 15993 0.7 0.402022
Target:  5'- gCGaAGGgCggacgCGguCAGCCCGGGCgAGGCCc -3'
miRNA:   3'- -GC-UCCgGa----GU--GUCGGGUCCGgUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 16499 0.7 0.393925
Target:  5'- aGGGuGCCUCcCcgGGuCCCAGGCCAG-CCg -3'
miRNA:   3'- gCUC-CGGAGuG--UC-GGGUCCGGUCcGG- -5'
28973 3' -62.9 NC_006146.1 + 16528 0.67 0.534773
Target:  5'- gGAGGgacCCcgGCAGCCCGgguGGCCccagAGGCCa -3'
miRNA:   3'- gCUCC---GGagUGUCGGGU---CCGG----UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.