Results 61 - 80 of 562 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 16789 | 0.71 | 0.355062 |
Target: 5'- --cGGCCUCuCGGguccaCCAGGCC-GGCCg -3' miRNA: 3'- gcuCCGGAGuGUCg----GGUCCGGuCCGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 17445 | 0.67 | 0.582581 |
Target: 5'- -cGGGCCUgucagACAGCCCugucuaGGGCCGGGa- -3' miRNA: 3'- gcUCCGGAg----UGUCGGG------UCCGGUCCgg -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 17745 | 0.66 | 0.591293 |
Target: 5'- --uGGUaaaugUCAgGGCCCAGggggguucgcguuGCCAGGCCa -3' miRNA: 3'- gcuCCGg----AGUgUCGGGUC-------------CGGUCCGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 17932 | 0.68 | 0.469517 |
Target: 5'- aGGGGucuucuaCCUCACucuAGCCCuccAGGCCuccgAGGCCc -3' miRNA: 3'- gCUCC-------GGAGUG---UCGGG---UCCGG----UCCGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 18102 | 0.68 | 0.488421 |
Target: 5'- --cGGaCCUUccaGGCCCGGGCCcccaggucucGGGCCa -3' miRNA: 3'- gcuCC-GGAGug-UCGGGUCCGG----------UCCGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 18465 | 0.68 | 0.479374 |
Target: 5'- aGucGCCUCAa--CCCGGGCUucAGGCCc -3' miRNA: 3'- gCucCGGAGUgucGGGUCCGG--UCCGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 18616 | 0.67 | 0.534773 |
Target: 5'- cCGGGGCCUUucaGGCCC---UCGGGCCc -3' miRNA: 3'- -GCUCCGGAGug-UCGGGuccGGUCCGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 18768 | 1.11 | 0.000537 |
Target: 5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3' miRNA: 3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 18868 | 0.73 | 0.249497 |
Target: 5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3' miRNA: 3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 19021 | 0.69 | 0.418529 |
Target: 5'- gCGAGGCUggGUGGCUgggCAGGCCGGGUCu -3' miRNA: 3'- -GCUCCGGagUGUCGG---GUCCGGUCCGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 19577 | 0.7 | 0.393925 |
Target: 5'- aGGGuGCCUCcCcgGGuCCCAGGCCAG-CCg -3' miRNA: 3'- gCUC-CGGAGuG--UC-GGGUCCGGUCcGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 19606 | 0.67 | 0.534773 |
Target: 5'- gGAGGgacCCcgGCAGCCCGgguGGCCccagAGGCCa -3' miRNA: 3'- gCUCC---GGagUGUCGGGU---CCGG----UCCGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 19867 | 0.71 | 0.355062 |
Target: 5'- --cGGCCUCuCGGguccaCCAGGCC-GGCCg -3' miRNA: 3'- gcuCCGGAGuGUCg----GGUCCGGuCCGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 19990 | 0.69 | 0.46153 |
Target: 5'- gGAGGCCcCACGaCgCCGGGaagggcuuccuCCGGGCCa -3' miRNA: 3'- gCUCCGGaGUGUcG-GGUCC-----------GGUCCGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 20523 | 0.67 | 0.582581 |
Target: 5'- -cGGGCCUgucagACAGCCCugucuaGGGCCGGGa- -3' miRNA: 3'- gcUCCGGAg----UGUCGGG------UCCGGUCCgg -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 20823 | 0.66 | 0.591293 |
Target: 5'- --uGGUaaaugUCAgGGCCCAGggggguucgcguuGCCAGGCCa -3' miRNA: 3'- gcuCCGg----AGUgUCGGGUC-------------CGGUCCGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 20912 | 0.71 | 0.332359 |
Target: 5'- gGAGGCC-CugAGUCC-GGCCgaccugcAGGCCc -3' miRNA: 3'- gCUCCGGaGugUCGGGuCCGG-------UCCGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 21009 | 0.68 | 0.505827 |
Target: 5'- aGGGGucuucuaCCUCACucuAGCCCuccAGGCCcuccgAGGCCc -3' miRNA: 3'- gCUCC-------GGAGUG---UCGGG---UCCGG-----UCCGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 21180 | 0.68 | 0.488421 |
Target: 5'- --cGGaCCUUccaGGCCCGGGCCcccaggucucGGGCCa -3' miRNA: 3'- gcuCC-GGAGug-UCGGGUCCGG----------UCCGG- -5' |
|||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 21543 | 0.68 | 0.479374 |
Target: 5'- aGucGCCUCAa--CCCGGGCUucAGGCCc -3' miRNA: 3'- gCucCGGAGUgucGGGUCCGG--UCCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home