miRNA display CGI


Results 61 - 80 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28973 3' -62.9 NC_006146.1 + 154454 0.66 0.601969
Target:  5'- aGGGGCC-CugGGCCCcgAGGgC-GGCUc -3'
miRNA:   3'- gCUCCGGaGugUCGGG--UCCgGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 45049 0.66 0.601969
Target:  5'- -aGGGCCUCGCGGgCCuuGGGCUugaugaccGGUCg -3'
miRNA:   3'- gcUCCGGAGUGUCgGG--UCCGGu-------CCGG- -5'
28973 3' -62.9 NC_006146.1 + 130403 0.66 0.635087
Target:  5'- cCGAGGCagaguccgcugccuUUCGCGGCCCcucuGCCccccuucacccaccAGGCCa -3'
miRNA:   3'- -GCUCCG--------------GAGUGUCGGGuc--CGG--------------UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 148298 0.66 0.601969
Target:  5'- aGGGGCC-CugGGCCCcgAGGgC-GGCUc -3'
miRNA:   3'- gCUCCGGaGugUCGGG--UCCgGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 14667 0.66 0.591293
Target:  5'- --uGGUaaaugUCAgGGCCCAGggggguucgcguuGCCAGGCCa -3'
miRNA:   3'- gcuCCGg----AGUgUCGGGUC-------------CGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 17745 0.66 0.591293
Target:  5'- --uGGUaaaugUCAgGGCCCAGggggguucgcguuGCCAGGCCa -3'
miRNA:   3'- gcuCCGg----AGUgUCGGGUC-------------CGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 167273 0.66 0.631188
Target:  5'- cCGGGGCCgCGCguggggauGGCCggcgggagGGGCCGGcGCCu -3'
miRNA:   3'- -GCUCCGGaGUG--------UCGGg-------UCCGGUC-CGG- -5'
28973 3' -62.9 NC_006146.1 + 26862 0.66 0.601969
Target:  5'- uGAGcccCCUCGCAGauCCCAGugaagaagagcGCCGGGUCg -3'
miRNA:   3'- gCUCc--GGAGUGUC--GGGUC-----------CGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 33661 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 102862 0.66 0.592262
Target:  5'- aGGGcaGCCgcCACcuGGUCguGGCCGGGCCc -3'
miRNA:   3'- gCUC--CGGa-GUG--UCGGguCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 147113 0.66 0.592262
Target:  5'- uGGGGCUcaGCGGgcCCCAGacGCgCAGGCCg -3'
miRNA:   3'- gCUCCGGagUGUC--GGGUC--CG-GUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 33847 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 80335 0.66 0.620464
Target:  5'- uGGGGCCUUcu--CCCGGGucuucucCCGGGCCc -3'
miRNA:   3'- gCUCCGGAGugucGGGUCC-------GGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 165945 0.66 0.640937
Target:  5'- gGAGGCuCUCGUGGCCCcugguccccgGGGCaCAgagcacGGCCa -3'
miRNA:   3'- gCUCCG-GAGUGUCGGG----------UCCG-GU------CCGG- -5'
28973 3' -62.9 NC_006146.1 + 34218 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 34032 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 34311 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 99558 0.66 0.631188
Target:  5'- cCGGGGCagagaUCGgGGUCCAGGagguagaagaCGGGCUu -3'
miRNA:   3'- -GCUCCGg----AGUgUCGGGUCCg---------GUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 33939 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28973 3' -62.9 NC_006146.1 + 34404 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.