miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2898 3' -55.4 NC_001493.1 + 2818 0.66 0.926898
Target:  5'- --aCGAGGGCG-UGcUCAGCGCCa-- -3'
miRNA:   3'- guaGCUCCCGCgGCuAGUUGUGGacc -5'
2898 3' -55.4 NC_001493.1 + 3012 0.68 0.829509
Target:  5'- gGUCGAacagaaGGGCG-CGAUCGAC-CCgGGg -3'
miRNA:   3'- gUAGCU------CCCGCgGCUAGUUGuGGaCC- -5'
2898 3' -55.4 NC_001493.1 + 9802 0.71 0.677409
Target:  5'- gGUCagGAGcGCGCCGAUCAuCACCaGGa -3'
miRNA:   3'- gUAG--CUCcCGCGGCUAGUuGUGGaCC- -5'
2898 3' -55.4 NC_001493.1 + 14216 0.66 0.903604
Target:  5'- aCGUCGucGGGCGaCUGAgCGACGCggGGg -3'
miRNA:   3'- -GUAGCu-CCCGC-GGCUaGUUGUGgaCC- -5'
2898 3' -55.4 NC_001493.1 + 14995 0.72 0.615864
Target:  5'- -cUCGGGGGUG-CGAUCGAgGCCgcgGGu -3'
miRNA:   3'- guAGCUCCCGCgGCUAGUUgUGGa--CC- -5'
2898 3' -55.4 NC_001493.1 + 21553 0.69 0.80345
Target:  5'- ----aAGGGCGCCGu---GCAUCUGGg -3'
miRNA:   3'- guagcUCCCGCGGCuaguUGUGGACC- -5'
2898 3' -55.4 NC_001493.1 + 23457 0.98 0.017942
Target:  5'- gCAUCGA-GGCGCCGAUCAACACCUGGa -3'
miRNA:   3'- -GUAGCUcCCGCGGCUAGUUGUGGACC- -5'
2898 3' -55.4 NC_001493.1 + 25344 0.71 0.68657
Target:  5'- uGUCGGGuGuGCGuUCGAUCGgucuccuGCACCUGGa -3'
miRNA:   3'- gUAGCUC-C-CGC-GGCUAGU-------UGUGGACC- -5'
2898 3' -55.4 NC_001493.1 + 30255 0.74 0.524811
Target:  5'- cCAUCGuGGGCGaCGAUCGugagcaACACCgagGGg -3'
miRNA:   3'- -GUAGCuCCCGCgGCUAGU------UGUGGa--CC- -5'
2898 3' -55.4 NC_001493.1 + 37290 0.7 0.707792
Target:  5'- aCAUCGAGGGUuCCGAggcUCAguGCACaUGGu -3'
miRNA:   3'- -GUAGCUCCCGcGGCU---AGU--UGUGgACC- -5'
2898 3' -55.4 NC_001493.1 + 37495 0.7 0.707792
Target:  5'- cCAUUGuuugguGGGCcUCGAUCGGCugCUGGu -3'
miRNA:   3'- -GUAGCu-----CCCGcGGCUAGUUGugGACC- -5'
2898 3' -55.4 NC_001493.1 + 46966 0.67 0.876553
Target:  5'- uCAUCGGccuccgcauccGGGaucUCGAUCAGCAUCUGGc -3'
miRNA:   3'- -GUAGCU-----------CCCgc-GGCUAGUUGUGGACC- -5'
2898 3' -55.4 NC_001493.1 + 50948 0.71 0.656952
Target:  5'- --gUGGGGGUGCCgGGUCAugAUCUGa -3'
miRNA:   3'- guaGCUCCCGCGG-CUAGUugUGGACc -5'
2898 3' -55.4 NC_001493.1 + 57564 0.68 0.845991
Target:  5'- --aCGaAGGGCGCUGA-CGACACa-GGg -3'
miRNA:   3'- guaGC-UCCCGCGGCUaGUUGUGgaCC- -5'
2898 3' -55.4 NC_001493.1 + 58095 0.67 0.861689
Target:  5'- gCGUCG-GGGUGCUGGUCAuaGgUUGGa -3'
miRNA:   3'- -GUAGCuCCCGCGGCUAGUugUgGACC- -5'
2898 3' -55.4 NC_001493.1 + 60218 0.69 0.798062
Target:  5'- -cUCGcGGGCGCCGGuggcuuggucgacccUCGACACgUGu -3'
miRNA:   3'- guAGCuCCCGCGGCU---------------AGUUGUGgACc -5'
2898 3' -55.4 NC_001493.1 + 62352 0.68 0.829509
Target:  5'- --gCGGGGGCGguugcauuaUCGGUUAcCGCCUGGc -3'
miRNA:   3'- guaGCUCCCGC---------GGCUAGUuGUGGACC- -5'
2898 3' -55.4 NC_001493.1 + 64760 0.66 0.91573
Target:  5'- cCGUUGAGGGuCGCCcucuggacGAUCAcgcggcGCACCccGGu -3'
miRNA:   3'- -GUAGCUCCC-GCGG--------CUAGU------UGUGGa-CC- -5'
2898 3' -55.4 NC_001493.1 + 68449 0.72 0.615864
Target:  5'- gGUCGAGgagcacGGCGCCGAguu-CAUCUGGa -3'
miRNA:   3'- gUAGCUC------CCGCGGCUaguuGUGGACC- -5'
2898 3' -55.4 NC_001493.1 + 82087 0.67 0.868484
Target:  5'- uCGUCGAGGGUcuucuccgcccugGCCacgcGGUCuuugauCGCCUGGc -3'
miRNA:   3'- -GUAGCUCCCG-------------CGG----CUAGuu----GUGGACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.