miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2898 3' -55.4 NC_001493.1 + 112517 0.74 0.534723
Target:  5'- --aCGGGGGCGCCGAaUCAGUACCg-- -3'
miRNA:   3'- guaGCUCCCGCGGCU-AGUUGUGGacc -5'
2898 3' -55.4 NC_001493.1 + 110173 0.68 0.837844
Target:  5'- -cUCGAGGGCGgUGAUUaaGAUACCg-- -3'
miRNA:   3'- guAGCUCCCGCgGCUAG--UUGUGGacc -5'
2898 3' -55.4 NC_001493.1 + 58095 0.67 0.861689
Target:  5'- gCGUCG-GGGUGCUGGUCAuaGgUUGGa -3'
miRNA:   3'- -GUAGCuCCCGCGGCUAGUugUgGACC- -5'
2898 3' -55.4 NC_001493.1 + 89589 0.67 0.876553
Target:  5'- aCGUCGugacGGGCGCCGuuuUCccgGugGCaCUGGu -3'
miRNA:   3'- -GUAGCu---CCCGCGGCu--AG---UugUG-GACC- -5'
2898 3' -55.4 NC_001493.1 + 111343 0.67 0.876553
Target:  5'- uCGUCGAuGGCGCucacCGGUCcGGCACCcGGu -3'
miRNA:   3'- -GUAGCUcCCGCG----GCUAG-UUGUGGaCC- -5'
2898 3' -55.4 NC_001493.1 + 84962 0.67 0.883657
Target:  5'- gAUCGAGGG-GCUccUCGAUACgUGGu -3'
miRNA:   3'- gUAGCUCCCgCGGcuAGUUGUGgACC- -5'
2898 3' -55.4 NC_001493.1 + 14216 0.66 0.903604
Target:  5'- aCGUCGucGGGCGaCUGAgCGACGCggGGg -3'
miRNA:   3'- -GUAGCu-CCCGC-GGCUaGUUGUGgaCC- -5'
2898 3' -55.4 NC_001493.1 + 129770 0.66 0.903604
Target:  5'- aCGUCGucGGGCGaCUGAgCGACGCggGGg -3'
miRNA:   3'- -GUAGCu-CCCGC-GGCUaGUUGUGgaCC- -5'
2898 3' -55.4 NC_001493.1 + 64760 0.66 0.91573
Target:  5'- cCGUUGAGGGuCGCCcucuggacGAUCAcgcggcGCACCccGGu -3'
miRNA:   3'- -GUAGCUCCC-GCGG--------CUAGU------UGUGGa-CC- -5'
2898 3' -55.4 NC_001493.1 + 62352 0.68 0.829509
Target:  5'- --gCGGGGGCGguugcauuaUCGGUUAcCGCCUGGc -3'
miRNA:   3'- guaGCUCCCGC---------GGCUAGUuGUGGACC- -5'
2898 3' -55.4 NC_001493.1 + 112668 0.68 0.820994
Target:  5'- gCGUCGAGccuGCGCCcgaGAUCcccgAugGCCUGGa -3'
miRNA:   3'- -GUAGCUCc--CGCGG---CUAG----UugUGGACC- -5'
2898 3' -55.4 NC_001493.1 + 21553 0.69 0.80345
Target:  5'- ----aAGGGCGCCGu---GCAUCUGGg -3'
miRNA:   3'- guagcUCCCGCGGCuaguUGUGGACC- -5'
2898 3' -55.4 NC_001493.1 + 14995 0.72 0.615864
Target:  5'- -cUCGGGGGUG-CGAUCGAgGCCgcgGGu -3'
miRNA:   3'- guAGCUCCCGCgGCUAGUUgUGGa--CC- -5'
2898 3' -55.4 NC_001493.1 + 68449 0.72 0.615864
Target:  5'- gGUCGAGgagcacGGCGCCGAguu-CAUCUGGa -3'
miRNA:   3'- gUAGCUC------CCGCGGCUaguuGUGGACC- -5'
2898 3' -55.4 NC_001493.1 + 130550 0.72 0.615864
Target:  5'- -cUCGGGGGUG-CGAUCGAgGCCgcgGGu -3'
miRNA:   3'- guAGCUCCCGCgGCUAGUUgUGGa--CC- -5'
2898 3' -55.4 NC_001493.1 + 87939 0.71 0.697716
Target:  5'- uUAUCGAGGucaugGCUcacggGAUCGGCGCCUGGa -3'
miRNA:   3'- -GUAGCUCCcg---CGG-----CUAGUUGUGGACC- -5'
2898 3' -55.4 NC_001493.1 + 37290 0.7 0.707792
Target:  5'- aCAUCGAGGGUuCCGAggcUCAguGCACaUGGu -3'
miRNA:   3'- -GUAGCUCCCGcGGCU---AGU--UGUGgACC- -5'
2898 3' -55.4 NC_001493.1 + 37495 0.7 0.707792
Target:  5'- cCAUUGuuugguGGGCcUCGAUCGGCugCUGGu -3'
miRNA:   3'- -GUAGCu-----CCCGcGGCUAGUUGugGACC- -5'
2898 3' -55.4 NC_001493.1 + 84678 0.69 0.775985
Target:  5'- aUAUCGcuuacuGGGCGCCcucaGAUCGGCgACgCUGGa -3'
miRNA:   3'- -GUAGCu-----CCCGCGG----CUAGUUG-UG-GACC- -5'
2898 3' -55.4 NC_001493.1 + 60218 0.69 0.798062
Target:  5'- -cUCGcGGGCGCCGGuggcuuggucgacccUCGACACgUGu -3'
miRNA:   3'- guAGCuCCCGCGGCU---------------AGUUGUGgACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.