miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2898 5' -56 NC_001493.1 + 19066 0.66 0.901703
Target:  5'- aCCCCcGGGAGAGAcccCGGUugacacucuugaucGCCCa-- -3'
miRNA:   3'- -GGGGuCCCUCUCUaa-GCUA--------------CGGGagu -5'
2898 5' -56 NC_001493.1 + 91044 0.66 0.897186
Target:  5'- cCCCCAGGGAccguugcuucuGGGAUUCGGUcagGCacacgUUCAc -3'
miRNA:   3'- -GGGGUCCCU-----------CUCUAAGCUA---CGg----GAGU- -5'
2898 5' -56 NC_001493.1 + 132104 0.66 0.897186
Target:  5'- gCCCCAGGGcGAGAg-----GCCCg-- -3'
miRNA:   3'- -GGGGUCCCuCUCUaagcuaCGGGagu -5'
2898 5' -56 NC_001493.1 + 16550 0.66 0.897186
Target:  5'- gCCCCAGGGcGAGAg-----GCCCg-- -3'
miRNA:   3'- -GGGGUCCCuCUCUaagcuaCGGGagu -5'
2898 5' -56 NC_001493.1 + 7831 0.66 0.890536
Target:  5'- uCCCCGGGGGGAGGguuaaUCGGggagGUCaccgggagaCUCGa -3'
miRNA:   3'- -GGGGUCCCUCUCUa----AGCUa---CGG---------GAGU- -5'
2898 5' -56 NC_001493.1 + 123385 0.66 0.890536
Target:  5'- uCCCCGGGGGGAGGguuaaUCGGggagGUCaccgggagaCUCGa -3'
miRNA:   3'- -GGGGUCCCUCUCUa----AGCUa---CGG---------GAGU- -5'
2898 5' -56 NC_001493.1 + 56253 0.66 0.883657
Target:  5'- aCCCCGGucucacauuuaGGaAGAcGGUUCGG-GCCCUCc -3'
miRNA:   3'- -GGGGUC-----------CC-UCU-CUAAGCUaCGGGAGu -5'
2898 5' -56 NC_001493.1 + 94987 0.66 0.876553
Target:  5'- gCCCCGuGGccuAGAGAUagGAUGUUCUCGc -3'
miRNA:   3'- -GGGGUcCC---UCUCUAagCUACGGGAGU- -5'
2898 5' -56 NC_001493.1 + 64314 0.66 0.876553
Target:  5'- cCCaCCAaGGcGAGGUUCGAUGCCa--- -3'
miRNA:   3'- -GG-GGUcCCuCUCUAAGCUACGGgagu -5'
2898 5' -56 NC_001493.1 + 47257 0.66 0.869228
Target:  5'- aCCaUCAGGGcGGGGUUCGAcGCCaUCGu -3'
miRNA:   3'- -GG-GGUCCCuCUCUAAGCUaCGGgAGU- -5'
2898 5' -56 NC_001493.1 + 57036 0.67 0.845991
Target:  5'- aCCUGGGGGcuguacuguacGAGA-UCaGUGCCCUCGa -3'
miRNA:   3'- gGGGUCCCU-----------CUCUaAGcUACGGGAGU- -5'
2898 5' -56 NC_001493.1 + 84586 0.67 0.845991
Target:  5'- uCCCCgAGGGGGGcuuccUCGAUGUCgUCGa -3'
miRNA:   3'- -GGGG-UCCCUCUcua--AGCUACGGgAGU- -5'
2898 5' -56 NC_001493.1 + 89405 0.67 0.837844
Target:  5'- aUCCGGGGGGAGAagugucUCGG-GCCCg-- -3'
miRNA:   3'- gGGGUCCCUCUCUa-----AGCUaCGGGagu -5'
2898 5' -56 NC_001493.1 + 46872 0.67 0.837844
Target:  5'- gCUCCAGGaAGAGAUUCGcca-CCUCGg -3'
miRNA:   3'- -GGGGUCCcUCUCUAAGCuacgGGAGU- -5'
2898 5' -56 NC_001493.1 + 25455 0.68 0.812304
Target:  5'- uCUCCGGGGGGAucaaccgcgugcGAUccUCGucGCCCUCGg -3'
miRNA:   3'- -GGGGUCCCUCU------------CUA--AGCuaCGGGAGU- -5'
2898 5' -56 NC_001493.1 + 6119 0.69 0.75701
Target:  5'- -aCC-GGGAGAGAccacaUCGAgaagGCCCUCu -3'
miRNA:   3'- ggGGuCCCUCUCUa----AGCUa---CGGGAGu -5'
2898 5' -56 NC_001493.1 + 121673 0.69 0.75701
Target:  5'- -aCC-GGGAGAGAccacaUCGAgaagGCCCUCu -3'
miRNA:   3'- ggGGuCCCUCUCUa----AGCUa---CGGGAGu -5'
2898 5' -56 NC_001493.1 + 87793 0.69 0.75701
Target:  5'- gCCCCGGGGGGcAGGUccCGGgguagauccgGUCCUCGu -3'
miRNA:   3'- -GGGGUCCCUC-UCUAa-GCUa---------CGGGAGU- -5'
2898 5' -56 NC_001493.1 + 15541 0.69 0.737591
Target:  5'- gCCCC--GGAGGGucUCGAUGCgCUCAc -3'
miRNA:   3'- -GGGGucCCUCUCuaAGCUACGgGAGU- -5'
2898 5' -56 NC_001493.1 + 131095 0.69 0.737591
Target:  5'- gCCCC--GGAGGGucUCGAUGCgCUCAc -3'
miRNA:   3'- -GGGGucCCUCUCuaAGCUACGgGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.