miRNA display CGI


Results 61 - 80 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 20066 0.76 0.602651
Target:  5'- uCCGGCC-GGCCUgGUGGacccgAGAGGCCg -3'
miRNA:   3'- -GGCCGGuCCGGGgUAUUga---UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 16988 0.76 0.602651
Target:  5'- uCCGGCC-GGCCUgGUGGacccgAGAGGCCg -3'
miRNA:   3'- -GGCCGGuCCGGGgUAUUga---UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 117728 0.76 0.623216
Target:  5'- gCGGcCCAGGCCCCGagggagaGGCguGAGACCu -3'
miRNA:   3'- gGCC-GGUCCGGGGUa------UUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 71019 0.75 0.633512
Target:  5'- uUGGCCcuuGGCCCCA-GACaUAGAGACUu -3'
miRNA:   3'- gGCCGGu--CCGGGGUaUUG-AUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 49561 0.75 0.633512
Target:  5'- gCCGGCCAGGCCCa---GCau--GGCCu -3'
miRNA:   3'- -GGCCGGUCCGGGguauUGauuuCUGG- -5'
28982 5' -53 NC_006146.1 + 39619 0.75 0.643807
Target:  5'- aCgGGCCAGGCCCCGgccAACUucugcuucAAGuCCa -3'
miRNA:   3'- -GgCCGGUCCGGGGUa--UUGAu-------UUCuGG- -5'
28982 5' -53 NC_006146.1 + 161838 0.75 0.643807
Target:  5'- -gGGCCAcGCCCCGUG---GGAGACCg -3'
miRNA:   3'- ggCCGGUcCGGGGUAUugaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 109382 0.75 0.664361
Target:  5'- uCCaGCCcucugucuGGGCCUCA-GACUAAGGGCCg -3'
miRNA:   3'- -GGcCGG--------UCCGGGGUaUUGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 18760 0.75 0.664361
Target:  5'- cCCGGCCcucgAGGCCUCAcAGCcc-AGGCCa -3'
miRNA:   3'- -GGCCGG----UCCGGGGUaUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 21838 0.75 0.664361
Target:  5'- cCCGGCCcucgAGGCCUCAcAGCcc-AGGCCa -3'
miRNA:   3'- -GGCCGG----UCCGGGGUaUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 27993 0.75 0.664361
Target:  5'- cCCGGCCcucgAGGCCUCAcAGCcc-AGGCCa -3'
miRNA:   3'- -GGCCGG----UCCGGGGUaUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 24916 0.75 0.664361
Target:  5'- cCCGGCCcucgAGGCCUCAcAGCcc-AGGCCa -3'
miRNA:   3'- -GGCCGG----UCCGGGGUaUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 12603 0.75 0.664361
Target:  5'- cCCGGCCcucgAGGCCUCAcAGCcc-AGGCCa -3'
miRNA:   3'- -GGCCGG----UCCGGGGUaUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 15682 0.75 0.664361
Target:  5'- cCCGGCCcucgAGGCCUCAcAGCcc-AGGCCa -3'
miRNA:   3'- -GGCCGG----UCCGGGGUaUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 5178 0.75 0.674603
Target:  5'- cCUGGCCAGGCCCgA-GACguuuucccuGGGCCu -3'
miRNA:   3'- -GGCCGGUCCGGGgUaUUGauu------UCUGG- -5'
28982 5' -53 NC_006146.1 + 101363 0.75 0.674603
Target:  5'- -gGGCCAGGCagCCCAggUAAaggUUGGAGACCa -3'
miRNA:   3'- ggCCGGUCCG--GGGU--AUU---GAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 156060 0.75 0.674603
Target:  5'- cUCGGCCucccgcGGCCCCG-GGCccGAGACCg -3'
miRNA:   3'- -GGCCGGu-----CCGGGGUaUUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 155178 0.74 0.684809
Target:  5'- uCUGuGCCGGGCCCU---GCgcGAGGCCg -3'
miRNA:   3'- -GGC-CGGUCCGGGGuauUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 158454 0.74 0.694972
Target:  5'- -gGGCCAGaGUCCCcccgaGUGGCUcAAGGGCCa -3'
miRNA:   3'- ggCCGGUC-CGGGG-----UAUUGA-UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 55676 0.74 0.694972
Target:  5'- gCGGCCGGGCCUCGUucucGCccgcGGCCa -3'
miRNA:   3'- gGCCGGUCCGGGGUAu---UGauuuCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.