miRNA display CGI


Results 61 - 80 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 168856 0.66 0.982899
Target:  5'- gCCGcGCCcccucAGGCCCCAcccGACgcgcgcucGGGCCc -3'
miRNA:   3'- -GGC-CGG-----UCCGGGGUa--UUGauu-----UCUGG- -5'
28982 5' -53 NC_006146.1 + 169788 0.66 0.982899
Target:  5'- gCCGcGCCcccucAGGCCCCAcccGACgcgcgcucGGGCCc -3'
miRNA:   3'- -GGC-CGG-----UCCGGGGUa--UUGauu-----UCUGG- -5'
28982 5' -53 NC_006146.1 + 167924 0.66 0.982899
Target:  5'- gCCGcGCCcccucAGGCCCCAcccGACgcgcgcucGGGCCc -3'
miRNA:   3'- -GGC-CGG-----UCCGGGGUa--UUGauu-----UCUGG- -5'
28982 5' -53 NC_006146.1 + 126747 0.66 0.982899
Target:  5'- uCCGuGaCCgcGGGCCCCGggGGC-AGAGACa -3'
miRNA:   3'- -GGC-C-GG--UCCGGGGUa-UUGaUUUCUGg -5'
28982 5' -53 NC_006146.1 + 99398 0.66 0.982899
Target:  5'- -aGGCCGcGGCCUCc---CUGGAGGCg -3'
miRNA:   3'- ggCCGGU-CCGGGGuauuGAUUUCUGg -5'
28982 5' -53 NC_006146.1 + 46967 0.66 0.982899
Target:  5'- gCCGGCCAGccauccGCCCgGggucgggaGGC-GAGGACCc -3'
miRNA:   3'- -GGCCGGUC------CGGGgUa-------UUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 41082 0.66 0.982899
Target:  5'- gUCGuCCGGuGCUCCGUGAUgu-AGGCCc -3'
miRNA:   3'- -GGCcGGUC-CGGGGUAUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 55527 0.66 0.982899
Target:  5'- gCGGCCAGGgCCUccAGCUcc--GCCg -3'
miRNA:   3'- gGCCGGUCCgGGGuaUUGAuuucUGG- -5'
28982 5' -53 NC_006146.1 + 120604 0.66 0.982899
Target:  5'- aUGGCCAGGuuggcccccaCCCCGUcGgUGAAGAa- -3'
miRNA:   3'- gGCCGGUCC----------GGGGUAuUgAUUUCUgg -5'
28982 5' -53 NC_006146.1 + 162472 0.66 0.982899
Target:  5'- cCCGaGCUcuccuGGuCCCCAggguccgGACUauGAAGACCc -3'
miRNA:   3'- -GGC-CGGu----CC-GGGGUa------UUGA--UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 128298 0.66 0.982703
Target:  5'- cUCGGCCAGGUuggcgguCUCGcagAGCguguAGACCa -3'
miRNA:   3'- -GGCCGGUCCG-------GGGUa--UUGauu-UCUGG- -5'
28982 5' -53 NC_006146.1 + 49009 0.66 0.982307
Target:  5'- aCCGGCUAGGagccgcagggcguuCUCCGgGGCgcggcccGAGACCg -3'
miRNA:   3'- -GGCCGGUCC--------------GGGGUaUUGau-----UUCUGG- -5'
28982 5' -53 NC_006146.1 + 149978 0.66 0.982107
Target:  5'- -gGGCCAGGgCCUgcaggucggccgGACUcAGGGCCu -3'
miRNA:   3'- ggCCGGUCCgGGGua----------UUGAuUUCUGG- -5'
28982 5' -53 NC_006146.1 + 99125 0.66 0.9817
Target:  5'- uCCGGCCucaggcgucuccacaGgGGCUCCAgcgaccggcaggUGGCgGAGGGCCa -3'
miRNA:   3'- -GGCCGG---------------U-CCGGGGU------------AUUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 4007 0.66 0.980867
Target:  5'- cCCcGCCuGGCcugaCCCAgaccUGACUGuGGGCCa -3'
miRNA:   3'- -GGcCGGuCCG----GGGU----AUUGAUuUCUGG- -5'
28982 5' -53 NC_006146.1 + 163402 0.66 0.980867
Target:  5'- aCGGCCugcccGGCUCCu---CUGAGGGgCa -3'
miRNA:   3'- gGCCGGu----CCGGGGuauuGAUUUCUgG- -5'
28982 5' -53 NC_006146.1 + 96899 0.66 0.980867
Target:  5'- uCUGGUCcgugAGGCacuugaCCAccguGCUGGAGACCu -3'
miRNA:   3'- -GGCCGG----UCCGg-----GGUau--UGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 119517 0.66 0.980867
Target:  5'- gCCGGgaGGGgCCCGggggAGCcagAGGGGCCa -3'
miRNA:   3'- -GGCCggUCCgGGGUa---UUGa--UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 128395 0.66 0.980867
Target:  5'- uCUGGCCcGGCgCCGcGGCgccccccuGGGCCg -3'
miRNA:   3'- -GGCCGGuCCGgGGUaUUGauu-----UCUGG- -5'
28982 5' -53 NC_006146.1 + 151963 0.66 0.980867
Target:  5'- aCUGGgCAGGCgCaa-GGCUGAcgGGGCCa -3'
miRNA:   3'- -GGCCgGUCCGgGguaUUGAUU--UCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.