miRNA display CGI


Results 41 - 60 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 28407 0.66 0.984764
Target:  5'- uCCGGCCgccggaGGGCucuaaCCCGUcuCUGuccacuagagGGGACCg -3'
miRNA:   3'- -GGCCGG------UCCG-----GGGUAuuGAU----------UUCUGG- -5'
28982 5' -53 NC_006146.1 + 29031 0.66 0.984764
Target:  5'- cCCGGgCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3'
miRNA:   3'- -GGCC-GG----UCCGGGGua-UUGAU----UUCUGG- -5'
28982 5' -53 NC_006146.1 + 111219 0.66 0.984764
Target:  5'- --cGCCAucaGCUCCGU-GCUAAAGGCCc -3'
miRNA:   3'- ggcCGGUc--CGGGGUAuUGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 41540 0.66 0.984764
Target:  5'- aCC-GCCAGGCCCU--------GGGCCa -3'
miRNA:   3'- -GGcCGGUCCGGGGuauugauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 22633 0.66 0.984764
Target:  5'- gCGGCUgaacccgaggAGGCgCCCGgAGC--GAGGCCg -3'
miRNA:   3'- gGCCGG----------UCCG-GGGUaUUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 25711 0.66 0.984764
Target:  5'- gCGGCUgaacccgaggAGGCgCCCGgAGC--GAGGCCg -3'
miRNA:   3'- gGCCGG----------UCCG-GGGUaUUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 19555 0.66 0.984764
Target:  5'- gCGGCUgaacccgaggAGGCgCCCGgAGC--GAGGCCg -3'
miRNA:   3'- gGCCGG----------UCCG-GGGUaUUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 16477 0.66 0.984764
Target:  5'- gCGGCUgaacccgaggAGGCgCCCGgAGC--GAGGCCg -3'
miRNA:   3'- gGCCGG----------UCCG-GGGUaUUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 13400 0.66 0.984764
Target:  5'- gCGGCUgaacccgaggAGGCgCCCGgAGC--GAGGCCg -3'
miRNA:   3'- gGCCGG----------UCCG-GGGUaUUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 109486 0.66 0.984764
Target:  5'- gCGGCCGGGgccgagaucccUCCCA--GCUAc-GACCu -3'
miRNA:   3'- gGCCGGUCC-----------GGGGUauUGAUuuCUGG- -5'
28982 5' -53 NC_006146.1 + 151580 0.66 0.983093
Target:  5'- gCCGGCCuGGUugccguagCCCAUGAUggagcggcgcguGACCc -3'
miRNA:   3'- -GGCCGGuCCG--------GGGUAUUGauuu--------CUGG- -5'
28982 5' -53 NC_006146.1 + 80841 0.66 0.982899
Target:  5'- aCGGCCAuGGCCCaCGUGcaUAAcGcACCc -3'
miRNA:   3'- gGCCGGU-CCGGG-GUAUugAUUuC-UGG- -5'
28982 5' -53 NC_006146.1 + 160668 0.66 0.982899
Target:  5'- -aGGCCuucaGGGCCggcaCAUGACc-AGGGCCg -3'
miRNA:   3'- ggCCGG----UCCGGg---GUAUUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 162472 0.66 0.982899
Target:  5'- cCCGaGCUcuccuGGuCCCCAggguccgGACUauGAAGACCc -3'
miRNA:   3'- -GGC-CGGu----CC-GGGGUa------UUGA--UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 33715 0.66 0.982899
Target:  5'- cCCGGCCuacCCCCGUu-CUGGAGcuCCu -3'
miRNA:   3'- -GGCCGGuccGGGGUAuuGAUUUCu-GG- -5'
28982 5' -53 NC_006146.1 + 62080 0.66 0.982899
Target:  5'- aCCGGUCcGGCauuauagCCGUGGCggcAGGACUg -3'
miRNA:   3'- -GGCCGGuCCGg------GGUAUUGau-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 94159 0.66 0.982899
Target:  5'- cUCGuGCCcguGGGCCuCCAcgaAGCUGucGGCCu -3'
miRNA:   3'- -GGC-CGG---UCCGG-GGUa--UUGAUuuCUGG- -5'
28982 5' -53 NC_006146.1 + 55527 0.66 0.982899
Target:  5'- gCGGCCAGGgCCUccAGCUcc--GCCg -3'
miRNA:   3'- gGCCGGUCCgGGGuaUUGAuuucUGG- -5'
28982 5' -53 NC_006146.1 + 52595 0.66 0.982899
Target:  5'- aCCGaGCUGGGCacguCCGUcAGCU--GGGCCa -3'
miRNA:   3'- -GGC-CGGUCCGg---GGUA-UUGAuuUCUGG- -5'
28982 5' -53 NC_006146.1 + 126747 0.66 0.982899
Target:  5'- uCCGuGaCCgcGGGCCCCGggGGC-AGAGACa -3'
miRNA:   3'- -GGC-C-GG--UCCGGGGUa-UUGaUUUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.