miRNA display CGI


Results 81 - 100 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 96899 0.66 0.980867
Target:  5'- uCUGGUCcgugAGGCacuugaCCAccguGCUGGAGACCu -3'
miRNA:   3'- -GGCCGG----UCCGg-----GGUau--UGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 163402 0.66 0.980867
Target:  5'- aCGGCCugcccGGCUCCu---CUGAGGGgCa -3'
miRNA:   3'- gGCCGGu----CCGGGGuauuGAUUUCUgG- -5'
28982 5' -53 NC_006146.1 + 48543 0.66 0.980867
Target:  5'- gCCGGCCcgcuGGCCa---GACUGGAcGCCu -3'
miRNA:   3'- -GGCCGGu---CCGGgguaUUGAUUUcUGG- -5'
28982 5' -53 NC_006146.1 + 4007 0.66 0.980867
Target:  5'- cCCcGCCuGGCcugaCCCAgaccUGACUGuGGGCCa -3'
miRNA:   3'- -GGcCGGuCCG----GGGU----AUUGAUuUCUGG- -5'
28982 5' -53 NC_006146.1 + 169735 0.66 0.980867
Target:  5'- aUCGGCgCGGgggaGCCCCGgGGCggcccGGGGACCc -3'
miRNA:   3'- -GGCCG-GUC----CGGGGUaUUGa----UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 55597 0.66 0.980867
Target:  5'- -aGGUCuGGUCCCAgAGC--AGGGCCu -3'
miRNA:   3'- ggCCGGuCCGGGGUaUUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 61438 0.66 0.980867
Target:  5'- aCGGCCGGGCUgaUCAgcuUUGAGGugUc -3'
miRNA:   3'- gGCCGGUCCGG--GGUauuGAUUUCugG- -5'
28982 5' -53 NC_006146.1 + 63438 0.66 0.980867
Target:  5'- gCGGCCAuGCgCCAcaAGCUGAAGAa- -3'
miRNA:   3'- gGCCGGUcCGgGGUa-UUGAUUUCUgg -5'
28982 5' -53 NC_006146.1 + 167871 0.66 0.980867
Target:  5'- aUCGGCgCGGgggaGCCCCGgGGCggcccGGGGACCc -3'
miRNA:   3'- -GGCCG-GUC----CGGGGUaUUGa----UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 55838 0.66 0.980005
Target:  5'- uCCGGCUgcugcaccccucggGGGCCCUcuucuacGACUAcguguacGAGGCCc -3'
miRNA:   3'- -GGCCGG--------------UCCGGGGua-----UUGAU-------UUCUGG- -5'
28982 5' -53 NC_006146.1 + 60007 0.66 0.979563
Target:  5'- -aGGCCAacgcGGCCCCGUccccgccugcgcccgAGCccGAGACg -3'
miRNA:   3'- ggCCGGU----CCGGGGUA---------------UUGauUUCUGg -5'
28982 5' -53 NC_006146.1 + 12919 0.66 0.978659
Target:  5'- gCUGGUCucgcuugcuGGCCCCAaUGGCcgcGGGCCu -3'
miRNA:   3'- -GGCCGGu--------CCGGGGU-AUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 42867 0.66 0.978659
Target:  5'- aCGGUCAGGCagcuCCuguauuUAACUuugcGGGCCg -3'
miRNA:   3'- gGCCGGUCCGg---GGu-----AUUGAuu--UCUGG- -5'
28982 5' -53 NC_006146.1 + 28310 0.66 0.978659
Target:  5'- gCUGGUCucgcuugcuGGCCCCAaUGGCcgcGGGCCu -3'
miRNA:   3'- -GGCCGGu--------CCGGGGU-AUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 25232 0.66 0.978659
Target:  5'- gCUGGUCucgcuugcuGGCCCCAaUGGCcgcGGGCCu -3'
miRNA:   3'- -GGCCGGu--------CCGGGGU-AUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 34262 0.66 0.978659
Target:  5'- gCCGGCUGGGgguugugcacCCCCcgAGCgucuGGACg -3'
miRNA:   3'- -GGCCGGUCC----------GGGGuaUUGauu-UCUGg -5'
28982 5' -53 NC_006146.1 + 22154 0.66 0.978659
Target:  5'- gCUGGUCucgcuugcuGGCCCCAaUGGCcgcGGGCCu -3'
miRNA:   3'- -GGCCGGu--------CCGGGGU-AUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 19076 0.66 0.978659
Target:  5'- gCUGGUCucgcuugcuGGCCCCAaUGGCcgcGGGCCu -3'
miRNA:   3'- -GGCCGGu--------CCGGGGU-AUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 15998 0.66 0.978659
Target:  5'- gCUGGUCucgcuugcuGGCCCCAaUGGCcgcGGGCCu -3'
miRNA:   3'- -GGCCGGu--------CCGGGGU-AUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 164439 0.66 0.978659
Target:  5'- gUGGCCcaccAGGCCCCAcugaugguggUAACaau-GGCCc -3'
miRNA:   3'- gGCCGG----UCCGGGGU----------AUUGauuuCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.