Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2899 | 5' | -57.3 | NC_001493.1 | + | 95910 | 0.68 | 0.774836 |
Target: 5'- -gCCGG-CGGUCCGCUCGacuACUACg -3' miRNA: 3'- caGGCCaGCUAGGUGGGCgu-UGGUGg -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 87193 | 0.68 | 0.774836 |
Target: 5'- -aCCGaGUauGUCaccaCACCCGCAgcGCCACCg -3' miRNA: 3'- caGGC-CAgcUAG----GUGGGCGU--UGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 37035 | 0.68 | 0.774836 |
Target: 5'- -aCCGGcggggCGGaCCGCCaGCGACCACa -3' miRNA: 3'- caGGCCa----GCUaGGUGGgCGUUGGUGg -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 71222 | 0.68 | 0.774836 |
Target: 5'- -gCCGGUUGAugguaaucguUCCguggggACCgGCGACCAUCu -3' miRNA: 3'- caGGCCAGCU----------AGG------UGGgCGUUGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 109189 | 0.68 | 0.773912 |
Target: 5'- -aCCGGguucUCGGUCCaauggacaacgacGCCCuggaCAGCCGCCg -3' miRNA: 3'- caGGCC----AGCUAGG-------------UGGGc---GUUGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 71499 | 0.68 | 0.76554 |
Target: 5'- aUCCGGcgguaCGGUCCACggCgGUAACCACa -3' miRNA: 3'- cAGGCCa----GCUAGGUG--GgCGUUGGUGg -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 37701 | 0.68 | 0.763666 |
Target: 5'- -cCCGGUCGAcgaccccUCCAucCCCGCGcacaugcgcaaguACCAgCa -3' miRNA: 3'- caGGCCAGCU-------AGGU--GGGCGU-------------UGGUgG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 80027 | 0.68 | 0.756127 |
Target: 5'- aUUCGcUCGAUCgACCCuGCucACCACCc -3' miRNA: 3'- cAGGCcAGCUAGgUGGG-CGu-UGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 91517 | 0.68 | 0.746608 |
Target: 5'- -aCCGGUUccUCCACCgGUuccuCCACCu -3' miRNA: 3'- caGGCCAGcuAGGUGGgCGuu--GGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 117184 | 0.68 | 0.746608 |
Target: 5'- --aCGGUagGGUUCACgCCGUAGCUACCc -3' miRNA: 3'- cagGCCAg-CUAGGUG-GGCGUUGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 1630 | 0.68 | 0.746608 |
Target: 5'- --aCGGUagGGUUCACgCCGUAGCUACCc -3' miRNA: 3'- cagGCCAg-CUAGGUG-GGCGUUGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 54889 | 0.68 | 0.73699 |
Target: 5'- -cCCGGUCag-CgC-CCCGCcGCCACCa -3' miRNA: 3'- caGGCCAGcuaG-GuGGGCGuUGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 72234 | 0.68 | 0.734086 |
Target: 5'- gGUCUGGUguaauucacgagcaUGAUCCGCguCUGCuuCCACCu -3' miRNA: 3'- -CAGGCCA--------------GCUAGGUG--GGCGuuGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 4171 | 0.68 | 0.727283 |
Target: 5'- -gCCGGUCaccgugcucUCCACCUGC-ACCACa -3' miRNA: 3'- caGGCCAGcu-------AGGUGGGCGuUGGUGg -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 119725 | 0.68 | 0.727283 |
Target: 5'- -gCCGGUCaccgugcucUCCACCUGC-ACCACa -3' miRNA: 3'- caGGCCAGcu-------AGGUGGGCGuUGGUGg -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 118404 | 0.69 | 0.717495 |
Target: 5'- -cCCgGGUCGAUCgCGCCCuucuguuCGACCACg -3' miRNA: 3'- caGG-CCAGCUAG-GUGGGc------GUUGGUGg -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 2850 | 0.69 | 0.717495 |
Target: 5'- -cCCgGGUCGAUCgCGCCCuucuguuCGACCACg -3' miRNA: 3'- caGG-CCAGCUAG-GUGGGc------GUUGGUGg -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 23849 | 0.69 | 0.716513 |
Target: 5'- -aCUGGUCGGUcaugaucCCGCCCGgGAUC-CCa -3' miRNA: 3'- caGGCCAGCUA-------GGUGGGCgUUGGuGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 111653 | 0.69 | 0.707636 |
Target: 5'- gGUCCGacucuUCGggCgUACCCGCGAgCACCa -3' miRNA: 3'- -CAGGCc----AGCuaG-GUGGGCGUUgGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 42077 | 0.69 | 0.697715 |
Target: 5'- -cUCGGUCGugaccauggCCAUCCGUcgcuuGGCCACCu -3' miRNA: 3'- caGGCCAGCua-------GGUGGGCG-----UUGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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