miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2899 5' -57.3 NC_001493.1 + 31518 0.66 0.859575
Target:  5'- --aCGGaCGcugcaaCCGCCCGCGcCCACCu -3'
miRNA:   3'- cagGCCaGCua----GGUGGGCGUuGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 31640 0.73 0.442941
Target:  5'- uUCgaGGUacCGAUCCGCguuccucaCCGCGACCACCg -3'
miRNA:   3'- cAGg-CCA--GCUAGGUG--------GGCGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 32738 0.67 0.784009
Target:  5'- -cCCGGUCGcgaccgGUCCgGCCCGaGACC-CCu -3'
miRNA:   3'- caGGCCAGC------UAGG-UGGGCgUUGGuGG- -5'
2899 5' -57.3 NC_001493.1 + 37035 0.68 0.774836
Target:  5'- -aCCGGcggggCGGaCCGCCaGCGACCACa -3'
miRNA:   3'- caGGCCa----GCUaGGUGGgCGUUGGUGg -5'
2899 5' -57.3 NC_001493.1 + 37701 0.68 0.763666
Target:  5'- -cCCGGUCGAcgaccccUCCAucCCCGCGcacaugcgcaaguACCAgCa -3'
miRNA:   3'- caGGCCAGCU-------AGGU--GGGCGU-------------UGGUgG- -5'
2899 5' -57.3 NC_001493.1 + 40475 0.67 0.81069
Target:  5'- --gCGGgCGAUCCACCuCGaugGAUCGCCu -3'
miRNA:   3'- cagGCCaGCUAGGUGG-GCg--UUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 40768 0.67 0.801944
Target:  5'- -gCCGGUgGGgguauccaUCCACCCGCAguauuuguACCAg- -3'
miRNA:   3'- caGGCCAgCU--------AGGUGGGCGU--------UGGUgg -5'
2899 5' -57.3 NC_001493.1 + 42077 0.69 0.697715
Target:  5'- -cUCGGUCGugaccauggCCAUCCGUcgcuuGGCCACCu -3'
miRNA:   3'- caGGCCAGCua-------GGUGGGCG-----UUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 46336 0.67 0.81069
Target:  5'- -cCCGGUCaucCCGCUCGacuCCACCa -3'
miRNA:   3'- caGGCCAGcuaGGUGGGCguuGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 48526 0.66 0.844013
Target:  5'- -cCCGGUaGAgguuucugUCCGCCgGCGucgcguCCACCg -3'
miRNA:   3'- caGGCCAgCU--------AGGUGGgCGUu-----GGUGG- -5'
2899 5' -57.3 NC_001493.1 + 51982 0.67 0.827699
Target:  5'- uUCCaGGUCGAgauucUCC-UCCGCGAaaaacucccCCGCCa -3'
miRNA:   3'- cAGG-CCAGCU-----AGGuGGGCGUU---------GGUGG- -5'
2899 5' -57.3 NC_001493.1 + 54889 0.68 0.73699
Target:  5'- -cCCGGUCag-CgC-CCCGCcGCCACCa -3'
miRNA:   3'- caGGCCAGcuaG-GuGGGCGuUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 58655 0.82 0.144619
Target:  5'- -aCCGGUCGGUCgGCCCGCGGgacgaCACCg -3'
miRNA:   3'- caGGCCAGCUAGgUGGGCGUUg----GUGG- -5'
2899 5' -57.3 NC_001493.1 + 62062 0.67 0.819278
Target:  5'- -cCCGGUCG--UCGCCCGUugggauagcugAGCCGCg -3'
miRNA:   3'- caGGCCAGCuaGGUGGGCG-----------UUGGUGg -5'
2899 5' -57.3 NC_001493.1 + 62875 0.66 0.851892
Target:  5'- --aCGGgggCGAcCgGCaCCGUGACCACCa -3'
miRNA:   3'- cagGCCa--GCUaGgUG-GGCGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 62959 0.66 0.851892
Target:  5'- --aCGGgggCGAcCgGCaCCGUGACCACCa -3'
miRNA:   3'- cagGCCa--GCUaGgUG-GGCGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 63121 0.66 0.851892
Target:  5'- --aCGGgggCGAcCgGCaCCGUGACCACCa -3'
miRNA:   3'- cagGCCa--GCUaGgUG-GGCGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 63394 0.67 0.808082
Target:  5'- -aCCGG-CGAUgcccacgggagcgaCCGCaCCGUgguGACCACCa -3'
miRNA:   3'- caGGCCaGCUA--------------GGUG-GGCG---UUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 64163 0.7 0.621165
Target:  5'- aUCCugGGUCGGUCCAUacgaCCGCAcgagucgugaccgauAUCACCa -3'
miRNA:   3'- cAGG--CCAGCUAGGUG----GGCGU---------------UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 70810 0.68 0.774836
Target:  5'- -aCCGcGUCGuUCCACgCGaCGACCAUUa -3'
miRNA:   3'- caGGC-CAGCuAGGUGgGC-GUUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.