miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2899 5' -57.3 NC_001493.1 + 1630 0.68 0.746608
Target:  5'- --aCGGUagGGUUCACgCCGUAGCUACCc -3'
miRNA:   3'- cagGCCAg-CUAGGUG-GGCGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 2850 0.69 0.717495
Target:  5'- -cCCgGGUCGAUCgCGCCCuucuguuCGACCACg -3'
miRNA:   3'- caGG-CCAGCUAG-GUGGGc------GUUGGUGg -5'
2899 5' -57.3 NC_001493.1 + 3193 0.69 0.697715
Target:  5'- ---aGGUCGAggaugCCAucCCCGCGGCCGuCCc -3'
miRNA:   3'- caggCCAGCUa----GGU--GGGCGUUGGU-GG- -5'
2899 5' -57.3 NC_001493.1 + 4171 0.68 0.727283
Target:  5'- -gCCGGUCaccgugcucUCCACCUGC-ACCACa -3'
miRNA:   3'- caGGCCAGcu-------AGGUGGGCGuUGGUGg -5'
2899 5' -57.3 NC_001493.1 + 9885 0.66 0.835947
Target:  5'- -gCCGGUCGAgCCGCagcaGCAggaggggguACCGCUa -3'
miRNA:   3'- caGGCCAGCUaGGUGgg--CGU---------UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 10698 0.69 0.667663
Target:  5'- -cCCGGaucgCGAaCCGgCCGCggUCACCg -3'
miRNA:   3'- caGGCCa---GCUaGGUgGGCGuuGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 12655 0.66 0.862593
Target:  5'- cGUCCGGuUCGAgcgCCgcgaguaucccgagcGCCC-CGACC-CCg -3'
miRNA:   3'- -CAGGCC-AGCUa--GG---------------UGGGcGUUGGuGG- -5'
2899 5' -57.3 NC_001493.1 + 13441 0.66 0.854218
Target:  5'- -gCCGGUagcCGAUCUcgcaucucuuucuguGCCCGCAcgcgaagAUCACCc -3'
miRNA:   3'- caGGCCA---GCUAGG---------------UGGGCGU-------UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 14293 0.69 0.67772
Target:  5'- cGUCCcuUCGAgagcgCCACCCcCAucGCCACCa -3'
miRNA:   3'- -CAGGccAGCUa----GGUGGGcGU--UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 14450 0.66 0.859575
Target:  5'- gGUCCGGgaaGAaaguggCACCCGCGcCCAUCc -3'
miRNA:   3'- -CAGGCCag-CUag----GUGGGCGUuGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 14924 0.66 0.83513
Target:  5'- -cCCGG-CGGUCCGCCCcauggggGCAGgggggaagggcuUCGCCg -3'
miRNA:   3'- caGGCCaGCUAGGUGGG-------CGUU------------GGUGG- -5'
2899 5' -57.3 NC_001493.1 + 15169 0.69 0.67772
Target:  5'- --aCGG-CGAccuuUCCACCCGCGGCCucgaucgcACCc -3'
miRNA:   3'- cagGCCaGCU----AGGUGGGCGUUGG--------UGG- -5'
2899 5' -57.3 NC_001493.1 + 16074 0.7 0.637357
Target:  5'- ---aGGUCGAuggguuuuUCCGCCCuguccGCGAUCACCg -3'
miRNA:   3'- caggCCAGCU--------AGGUGGG-----CGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 17585 0.66 0.866319
Target:  5'- aUCUGGaacaCGAUCCcgggcacGCCCGCGuuGCgGCCc -3'
miRNA:   3'- cAGGCCa---GCUAGG-------UGGGCGU--UGgUGG- -5'
2899 5' -57.3 NC_001493.1 + 18347 0.67 0.801944
Target:  5'- -cCCaGUCcca-CACCCGCGugGCCACCg -3'
miRNA:   3'- caGGcCAGcuagGUGGGCGU--UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 23106 0.66 0.851892
Target:  5'- -aUCGGUCGAuacgugacccUCCACCaaCAACCucuCCa -3'
miRNA:   3'- caGGCCAGCU----------AGGUGGgcGUUGGu--GG- -5'
2899 5' -57.3 NC_001493.1 + 23849 0.69 0.716513
Target:  5'- -aCUGGUCGGUcaugaucCCGCCCGgGAUC-CCa -3'
miRNA:   3'- caGGCCAGCUA-------GGUGGGCgUUGGuGG- -5'
2899 5' -57.3 NC_001493.1 + 28199 1.12 0.001413
Target:  5'- gGUCCGGUCGAUCCACCCGCAACCACCg -3'
miRNA:   3'- -CAGGCCAGCUAGGUGGGCGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 30511 0.66 0.867058
Target:  5'- uGUCCGGggCGAUCC-CCCuu-GCCGUCa -3'
miRNA:   3'- -CAGGCCa-GCUAGGuGGGcguUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 31070 0.7 0.627236
Target:  5'- -aCCGGgaCGGUCCACgCCGUGACCGgUg -3'
miRNA:   3'- caGGCCa-GCUAGGUG-GGCGUUGGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.