miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2899 5' -57.3 NC_001493.1 + 28199 1.12 0.001413
Target:  5'- gGUCCGGUCGAUCCACCCGCAACCACCg -3'
miRNA:   3'- -CAGGCCAGCUAGGUGGGCGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 58655 0.82 0.144619
Target:  5'- -aCCGGUCGGUCgGCCCGCGGgacgaCACCg -3'
miRNA:   3'- caGGCCAGCUAGgUGGGCGUUg----GUGG- -5'
2899 5' -57.3 NC_001493.1 + 73017 0.76 0.343329
Target:  5'- aGUCCGG---GUCCACCUGCgAGCCAUCg -3'
miRNA:   3'- -CAGGCCagcUAGGUGGGCG-UUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 92812 0.75 0.350987
Target:  5'- cUCCGGUCGAgcucgccCCACCCGaCGGCguCCc -3'
miRNA:   3'- cAGGCCAGCUa------GGUGGGC-GUUGguGG- -5'
2899 5' -57.3 NC_001493.1 + 31640 0.73 0.442941
Target:  5'- uUCgaGGUacCGAUCCGCguuccucaCCGCGACCACCg -3'
miRNA:   3'- cAGg-CCA--GCUAGGUG--------GGCGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 114325 0.72 0.508032
Target:  5'- aUCCGGUgGA-CCGCCgGCGGCUuCCu -3'
miRNA:   3'- cAGGCCAgCUaGGUGGgCGUUGGuGG- -5'
2899 5' -57.3 NC_001493.1 + 90137 0.72 0.51767
Target:  5'- -aCCGGcCGGUCCGUgCGCGACC-CCg -3'
miRNA:   3'- caGGCCaGCUAGGUGgGCGUUGGuGG- -5'
2899 5' -57.3 NC_001493.1 + 91769 0.72 0.546998
Target:  5'- --aCGGagGGUgCGCCCGCGACCGgCg -3'
miRNA:   3'- cagGCCagCUAgGUGGGCGUUGGUgG- -5'
2899 5' -57.3 NC_001493.1 + 81774 0.71 0.586863
Target:  5'- aGUCCGaGUCGGUCaugGCUCGCGcgacggagaucAUCACCg -3'
miRNA:   3'- -CAGGC-CAGCUAGg--UGGGCGU-----------UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 114493 0.71 0.607013
Target:  5'- cUCgGGaUCGAggaagCCGCCgGCGGuCCACCg -3'
miRNA:   3'- cAGgCC-AGCUa----GGUGGgCGUU-GGUGG- -5'
2899 5' -57.3 NC_001493.1 + 64163 0.7 0.621165
Target:  5'- aUCCugGGUCGGUCCAUacgaCCGCAcgagucgugaccgauAUCACCa -3'
miRNA:   3'- cAGG--CCAGCUAGGUG----GGCGU---------------UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 93699 0.7 0.627236
Target:  5'- uUCaCGGUCGAUCUAUCgGUgaAACCaACCg -3'
miRNA:   3'- cAG-GCCAGCUAGGUGGgCG--UUGG-UGG- -5'
2899 5' -57.3 NC_001493.1 + 31070 0.7 0.627236
Target:  5'- -aCCGGgaCGGUCCACgCCGUGACCGgUg -3'
miRNA:   3'- caGGCCa-GCUAGGUG-GGCGUUGGUgG- -5'
2899 5' -57.3 NC_001493.1 + 131628 0.7 0.637357
Target:  5'- ---aGGUCGAuggguuuuUCCGCCCuguccGCGAUCACCg -3'
miRNA:   3'- caggCCAGCU--------AGGUGGG-----CGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 16074 0.7 0.637357
Target:  5'- ---aGGUCGAuggguuuuUCCGCCCuguccGCGAUCACCg -3'
miRNA:   3'- caggCCAGCU--------AGGUGGG-----CGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 10698 0.69 0.667663
Target:  5'- -cCCGGaucgCGAaCCGgCCGCggUCACCg -3'
miRNA:   3'- caGGCCa---GCUaGGUgGGCGuuGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 126252 0.69 0.667663
Target:  5'- -cCCGGaucgCGAaCCGgCCGCggUCACCg -3'
miRNA:   3'- caGGCCa---GCUaGGUgGGCGuuGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 14293 0.69 0.67772
Target:  5'- cGUCCcuUCGAgagcgCCACCCcCAucGCCACCa -3'
miRNA:   3'- -CAGGccAGCUa----GGUGGGcGU--UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 129847 0.69 0.67772
Target:  5'- cGUCCcuUCGAgagcgCCACCCcCAucGCCACCa -3'
miRNA:   3'- -CAGGccAGCUa----GGUGGGcGU--UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 130723 0.69 0.67772
Target:  5'- --aCGG-CGAccuuUCCACCCGCGGCCucgaucgcACCc -3'
miRNA:   3'- cagGCCaGCU----AGGUGGGCGUUGG--------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.