miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2899 5' -57.3 NC_001493.1 + 95910 0.68 0.774836
Target:  5'- -gCCGG-CGGUCCGCUCGacuACUACg -3'
miRNA:   3'- caGGCCaGCUAGGUGGGCgu-UGGUGg -5'
2899 5' -57.3 NC_001493.1 + 118404 0.69 0.717495
Target:  5'- -cCCgGGUCGAUCgCGCCCuucuguuCGACCACg -3'
miRNA:   3'- caGG-CCAGCUAG-GUGGGc------GUUGGUGg -5'
2899 5' -57.3 NC_001493.1 + 72234 0.68 0.734086
Target:  5'- gGUCUGGUguaauucacgagcaUGAUCCGCguCUGCuuCCACCu -3'
miRNA:   3'- -CAGGCCA--------------GCUAGGUG--GGCGuuGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 54889 0.68 0.73699
Target:  5'- -cCCGGUCag-CgC-CCCGCcGCCACCa -3'
miRNA:   3'- caGGCCAGcuaG-GuGGGCGuUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 91517 0.68 0.746608
Target:  5'- -aCCGGUUccUCCACCgGUuccuCCACCu -3'
miRNA:   3'- caGGCCAGcuAGGUGGgCGuu--GGUGG- -5'
2899 5' -57.3 NC_001493.1 + 1630 0.68 0.746608
Target:  5'- --aCGGUagGGUUCACgCCGUAGCUACCc -3'
miRNA:   3'- cagGCCAg-CUAGGUG-GGCGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 117184 0.68 0.746608
Target:  5'- --aCGGUagGGUUCACgCCGUAGCUACCc -3'
miRNA:   3'- cagGCCAg-CUAGGUG-GGCGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 71499 0.68 0.76554
Target:  5'- aUCCGGcgguaCGGUCCACggCgGUAACCACa -3'
miRNA:   3'- cAGGCCa----GCUAGGUG--GgCGUUGGUGg -5'
2899 5' -57.3 NC_001493.1 + 71222 0.68 0.774836
Target:  5'- -gCCGGUUGAugguaaucguUCCguggggACCgGCGACCAUCu -3'
miRNA:   3'- caGGCCAGCU----------AGG------UGGgCGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 2850 0.69 0.717495
Target:  5'- -cCCgGGUCGAUCgCGCCCuucuguuCGACCACg -3'
miRNA:   3'- caGG-CCAGCUAG-GUGGGc------GUUGGUGg -5'
2899 5' -57.3 NC_001493.1 + 111653 0.69 0.707636
Target:  5'- gGUCCGacucuUCGggCgUACCCGCGAgCACCa -3'
miRNA:   3'- -CAGGCc----AGCuaG-GUGGGCGUUgGUGG- -5'
2899 5' -57.3 NC_001493.1 + 93116 0.69 0.697715
Target:  5'- cGUUCGGaUCGugCUAuCCCGCGGCCACg -3'
miRNA:   3'- -CAGGCC-AGCuaGGU-GGGCGUUGGUGg -5'
2899 5' -57.3 NC_001493.1 + 73017 0.76 0.343329
Target:  5'- aGUCCGG---GUCCACCUGCgAGCCAUCg -3'
miRNA:   3'- -CAGGCCagcUAGGUGGGCG-UUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 92812 0.75 0.350987
Target:  5'- cUCCGGUCGAgcucgccCCACCCGaCGGCguCCc -3'
miRNA:   3'- cAGGCCAGCUa------GGUGGGC-GUUGguGG- -5'
2899 5' -57.3 NC_001493.1 + 31640 0.73 0.442941
Target:  5'- uUCgaGGUacCGAUCCGCguuccucaCCGCGACCACCg -3'
miRNA:   3'- cAGg-CCA--GCUAGGUG--------GGCGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 114325 0.72 0.508032
Target:  5'- aUCCGGUgGA-CCGCCgGCGGCUuCCu -3'
miRNA:   3'- cAGGCCAgCUaGGUGGgCGUUGGuGG- -5'
2899 5' -57.3 NC_001493.1 + 81774 0.71 0.586863
Target:  5'- aGUCCGaGUCGGUCaugGCUCGCGcgacggagaucAUCACCg -3'
miRNA:   3'- -CAGGC-CAGCUAGg--UGGGCGU-----------UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 93699 0.7 0.627236
Target:  5'- uUCaCGGUCGAUCUAUCgGUgaAACCaACCg -3'
miRNA:   3'- cAG-GCCAGCUAGGUGGgCG--UUGG-UGG- -5'
2899 5' -57.3 NC_001493.1 + 10698 0.69 0.667663
Target:  5'- -cCCGGaucgCGAaCCGgCCGCggUCACCg -3'
miRNA:   3'- caGGCCa---GCUaGGUgGGCGuuGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 126252 0.69 0.667663
Target:  5'- -cCCGGaucgCGAaCCGgCCGCggUCACCg -3'
miRNA:   3'- caGGCCa---GCUaGGUgGGCGuuGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.