miRNA display CGI


Results 81 - 100 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28990 3' -62.9 NC_006146.1 + 47651 0.66 0.611697
Target:  5'- --uGGCCgcggCcCGGCCCAGcGCgGcGGCCa -3'
miRNA:   3'- gcuCCGGa---GuGUCGGGUC-CGgU-CCGG- -5'
28990 3' -62.9 NC_006146.1 + 102559 0.66 0.611697
Target:  5'- aGAGGCgUC-CAGCagCAGGuCCGaGCCg -3'
miRNA:   3'- gCUCCGgAGuGUCGg-GUCC-GGUcCGG- -5'
28990 3' -62.9 NC_006146.1 + 167641 0.66 0.611697
Target:  5'- gCGGGGCCcggCGCGuGCCgGGGgCCcggGGGCg -3'
miRNA:   3'- -GCUCCGGa--GUGU-CGGgUCC-GG---UCCGg -5'
28990 3' -62.9 NC_006146.1 + 53335 0.66 0.611697
Target:  5'- gGAGGCCcgGCGGCCgCGGGgC-GGCg -3'
miRNA:   3'- gCUCCGGagUGUCGG-GUCCgGuCCGg -5'
28990 3' -62.9 NC_006146.1 + 48323 0.66 0.611697
Target:  5'- gGAGGUgCUgGCGGUgguGGGCCAGGCg -3'
miRNA:   3'- gCUCCG-GAgUGUCGgg-UCCGGUCCGg -5'
28990 3' -62.9 NC_006146.1 + 117691 0.66 0.608777
Target:  5'- -aAGGCC-CGCGgaguuuggcacgccGCCCcccaAGGCCGgGGCCg -3'
miRNA:   3'- gcUCCGGaGUGU--------------CGGG----UCCGGU-CCGG- -5'
28990 3' -62.9 NC_006146.1 + 105194 0.66 0.601969
Target:  5'- cCGGGGCCggGgAGCCgGGGgugcCCGGuGCCu -3'
miRNA:   3'- -GCUCCGGagUgUCGGgUCC----GGUC-CGG- -5'
28990 3' -62.9 NC_006146.1 + 128761 0.66 0.601969
Target:  5'- cCGAGGCCUUcuucuggaguGUGGCCagcaGGGCCGaagcgugaucGGCCa -3'
miRNA:   3'- -GCUCCGGAG----------UGUCGGg---UCCGGU----------CCGG- -5'
28990 3' -62.9 NC_006146.1 + 26862 0.66 0.601969
Target:  5'- uGAGcccCCUCGCAGauCCCAGugaagaagagcGCCGGGUCg -3'
miRNA:   3'- gCUCc--GGAGUGUC--GGGUC-----------CGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 99652 0.66 0.601969
Target:  5'- aGAGGCCgc----CCCccGCCAGGCCc -3'
miRNA:   3'- gCUCCGGagugucGGGucCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 58191 0.66 0.601969
Target:  5'- -cGGGCCUCAgGgacGCCCugcugcGGGCCAGaCCc -3'
miRNA:   3'- gcUCCGGAGUgU---CGGG------UCCGGUCcGG- -5'
28990 3' -62.9 NC_006146.1 + 45049 0.66 0.601969
Target:  5'- -aGGGCCUCGCGGgCCuuGGGCUugaugaccGGUCg -3'
miRNA:   3'- gcUCCGGAGUGUCgGG--UCCGGu-------CCGG- -5'
28990 3' -62.9 NC_006146.1 + 128391 0.66 0.601969
Target:  5'- -cAGGCaguagcCGCAGUCCAGGCagaacacGGCCa -3'
miRNA:   3'- gcUCCGga----GUGUCGGGUCCGgu-----CCGG- -5'
28990 3' -62.9 NC_006146.1 + 31671 0.66 0.601969
Target:  5'- -cAGGCaa-ACAGCCCAGGgaCCAGGg- -3'
miRNA:   3'- gcUCCGgagUGUCGGGUCC--GGUCCgg -5'
28990 3' -62.9 NC_006146.1 + 31602 0.66 0.601969
Target:  5'- -cAGGCUgaCACcacgggggaugGGCUCaAGGCCGGGCCc -3'
miRNA:   3'- gcUCCGGa-GUG-----------UCGGG-UCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 145220 0.66 0.601969
Target:  5'- aGGGGCC-CugGGCCCcgAGGgC-GGCUc -3'
miRNA:   3'- gCUCCGGaGugUCGGG--UCCgGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 154454 0.66 0.601969
Target:  5'- aGGGGCC-CugGGCCCcgAGGgC-GGCUc -3'
miRNA:   3'- gCUCCGGaGugUCGGG--UCCgGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 151376 0.66 0.601969
Target:  5'- aGGGGCC-CugGGCCCcgAGGgC-GGCUc -3'
miRNA:   3'- gCUCCGGaGugUCGGG--UCCgGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 148298 0.66 0.601969
Target:  5'- aGGGGCC-CugGGCCCcgAGGgC-GGCUc -3'
miRNA:   3'- gCUCCGGaGugUCGGG--UCCgGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 142142 0.66 0.601969
Target:  5'- aGGGGCC-CugGGCCCcgAGGgC-GGCUc -3'
miRNA:   3'- gCUCCGGaGugUCGGG--UCCgGuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.