miRNA display CGI


Results 61 - 80 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28990 3' -62.9 NC_006146.1 + 34497 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 34404 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 34311 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 33661 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 33754 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 33847 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 103675 0.66 0.621438
Target:  5'- cCGuGGCUUC-CuguGCCUggccGGCCAGGCg -3'
miRNA:   3'- -GCuCCGGAGuGu--CGGGu---CCGGUCCGg -5'
28990 3' -62.9 NC_006146.1 + 34032 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 34125 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 34218 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 80335 0.66 0.620464
Target:  5'- uGGGGCCUUcu--CCCGGGucuucucCCGGGCCc -3'
miRNA:   3'- gCUCCGGAGugucGGGUCC-------GGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 169475 0.66 0.618515
Target:  5'- gGGGGCCUCGgGGgcggagggggggguCCCgcgGGGCCcGGCg -3'
miRNA:   3'- gCUCCGGAGUgUC--------------GGG---UCCGGuCCGg -5'
28990 3' -62.9 NC_006146.1 + 168543 0.66 0.618515
Target:  5'- gGGGGCCUCGgGGgcggagggggggguCCCgcgGGGCCcGGCg -3'
miRNA:   3'- gCUCCGGAGUgUC--------------GGG---UCCGGuCCGg -5'
28990 3' -62.9 NC_006146.1 + 170406 0.66 0.618515
Target:  5'- gGGGGCCUCGgGGgcggagggggggguCCCgcgGGGCCcGGCg -3'
miRNA:   3'- gCUCCGGAGUgUC--------------GGG---UCCGGuCCGg -5'
28990 3' -62.9 NC_006146.1 + 126099 0.66 0.615592
Target:  5'- gCGGGGCCUCagaaacACaccauccagauccccGGCCUGGguuccccgcccGCCGGGCCc -3'
miRNA:   3'- -GCUCCGGAG------UG---------------UCGGGUC-----------CGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 48323 0.66 0.611697
Target:  5'- gGAGGUgCUgGCGGUgguGGGCCAGGCg -3'
miRNA:   3'- gCUCCG-GAgUGUCGgg-UCCGGUCCGg -5'
28990 3' -62.9 NC_006146.1 + 139571 0.66 0.611697
Target:  5'- uGAGGCCUguaAGCCCaaugAGGCUgcgggGGGCg -3'
miRNA:   3'- gCUCCGGAgugUCGGG----UCCGG-----UCCGg -5'
28990 3' -62.9 NC_006146.1 + 13057 0.66 0.611697
Target:  5'- aGGcGGCgCUCGguGCCCguccccuccgGGGCCAGcGCg -3'
miRNA:   3'- gCU-CCG-GAGUguCGGG----------UCCGGUC-CGg -5'
28990 3' -62.9 NC_006146.1 + 6414 0.66 0.611697
Target:  5'- uGGGGUCcCuuuGGCCCAgGGCCauguGGGCCc -3'
miRNA:   3'- gCUCCGGaGug-UCGGGU-CCGG----UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 92072 0.66 0.611697
Target:  5'- uGGGGCUgcugCugggggGCGGCCC-GGCCugGGGCUg -3'
miRNA:   3'- gCUCCGGa---G------UGUCGGGuCCGG--UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.