Results 41 - 60 of 562 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 33754 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 33847 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 33939 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 103675 | 0.66 | 0.621438 |
Target: 5'- cCGuGGCUUC-CuguGCCUggccGGCCAGGCg -3' miRNA: 3'- -GCuCCGGAGuGu--CGGGu---CCGGUCCGg -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 35705 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 35612 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 35519 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 35426 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 35333 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 35240 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 35147 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 35054 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 34961 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 143201 | 0.66 | 0.621438 |
Target: 5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3' miRNA: 3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 155513 | 0.66 | 0.621438 |
Target: 5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3' miRNA: 3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 158592 | 0.66 | 0.621438 |
Target: 5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3' miRNA: 3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 72574 | 0.66 | 0.621438 |
Target: 5'- -cGGGCCgcgCcCGGCCCcGuGCCAgacGGCCa -3' miRNA: 3'- gcUCCGGa--GuGUCGGGuC-CGGU---CCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 34218 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 34125 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 34032 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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