Results 21 - 40 of 562 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 3800 | 0.73 | 0.249497 |
Target: 5'- uGuGGCC-CACAGUCaggucuGGGUCAGGCCa -3' miRNA: 3'- gCuCCGGaGUGUCGGg-----UCCGGUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 61933 | 0.74 | 0.21715 |
Target: 5'- cCGAGGCCuUCACgGGCCCggugaucaAGGCUcaggacacggGGGCCg -3' miRNA: 3'- -GCUCCGG-AGUG-UCGGG--------UCCGG----------UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 129031 | 0.78 | 0.130918 |
Target: 5'- cCGGGGCacggCGCAGCCCGaGCUGGGCCc -3' miRNA: 3'- -GCUCCGga--GUGUCGGGUcCGGUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 21846 | 1.11 | 0.000537 |
Target: 5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3' miRNA: 3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 22945 | 0.73 | 0.261132 |
Target: 5'- --cGGCCUCuCGGUccaCCAGGCC-GGCCg -3' miRNA: 3'- gcuCCGGAGuGUCG---GGUCCGGuCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 25023 | 0.73 | 0.249497 |
Target: 5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3' miRNA: 3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 51976 | 0.77 | 0.148028 |
Target: 5'- gGAGGUCUC-CGGCaugCGGGCCGGGCg -3' miRNA: 3'- gCUCCGGAGuGUCGg--GUCCGGUCCGg -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 18768 | 1.11 | 0.000537 |
Target: 5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3' miRNA: 3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 18868 | 0.73 | 0.249497 |
Target: 5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3' miRNA: 3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 15690 | 1.11 | 0.000537 |
Target: 5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3' miRNA: 3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 113673 | 0.76 | 0.159249 |
Target: 5'- aGAGGUggCUCG-GGCCCGGGCCcGGCCu -3' miRNA: 3'- gCUCCG--GAGUgUCGGGUCCGGuCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 69862 | 0.73 | 0.249497 |
Target: 5'- gGAGGUCgggCGuagaGGCCCAGGuCCAcGGCCg -3' miRNA: 3'- gCUCCGGa--GUg---UCGGGUCC-GGU-CCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 78705 | 0.77 | 0.147667 |
Target: 5'- -cAGGCCgggCccgccccccagcaGCAGcCCCAGGCCGGGCCc -3' miRNA: 3'- gcUCCGGa--G-------------UGUC-GGGUCCGGUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 155142 | 0.77 | 0.144451 |
Target: 5'- cCGcGGCgUCGCAGCagCGGGCCAgGGCCa -3' miRNA: 3'- -GCuCCGgAGUGUCGg-GUCCGGU-CCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 78830 | 0.79 | 0.097052 |
Target: 5'- -cGGGCCgccccccgcaGCAGcCCCAGGCCGGGCCc -3' miRNA: 3'- gcUCCGGag--------UGUC-GGGUCCGGUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 28001 | 1.11 | 0.000537 |
Target: 5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3' miRNA: 3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 43321 | 0.73 | 0.273205 |
Target: 5'- --cGGCCggCGCGGCCUcGGCCgcccaGGGCCa -3' miRNA: 3'- gcuCCGGa-GUGUCGGGuCCGG-----UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 158820 | 0.73 | 0.267114 |
Target: 5'- -cAGGCa-CACGGCCgGGGCCcGGCCc -3' miRNA: 3'- gcUCCGgaGUGUCGGgUCCGGuCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 169432 | 0.73 | 0.249497 |
Target: 5'- gGAGGCC-CGCGGagaggCCguguguggAGGCCGGGCCu -3' miRNA: 3'- gCUCCGGaGUGUCg----GG--------UCCGGUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 28101 | 0.73 | 0.249497 |
Target: 5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3' miRNA: 3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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