Results 1 - 20 of 590 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28990 | 5' | -53 | NC_006146.1 | + | 12646 | 1.13 | 0.00351 |
Target: 5'- cCCGGCCAGGCCCCAUAACUAAAGACCc -3' miRNA: 3'- -GGCCGGUCCGGGGUAUUGAUUUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 99662 | 0.76 | 0.582176 |
Target: 5'- cCCcGCCAGGCCCCAgGAgUu--GACCa -3' miRNA: 3'- -GGcCGGUCCGGGGUaUUgAuuuCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 109583 | 0.76 | 0.592399 |
Target: 5'- gCCGGCUAGGCCaCCcgGGCaGGAcGCCg -3' miRNA: 3'- -GGCCGGUCCGG-GGuaUUGaUUUcUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 55762 | 0.66 | 0.98647 |
Target: 5'- cCCGGCggCGGGCCagg-GGCagcGAGGCCa -3' miRNA: 3'- -GGCCG--GUCCGGgguaUUGau-UUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 24958 | 1.13 | 0.00351 |
Target: 5'- cCCGGCCAGGCCCCAUAACUAAAGACCc -3' miRNA: 3'- -GGCCGGUCCGGGGUAUUGAUUUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 28036 | 1.13 | 0.00351 |
Target: 5'- cCCGGCCAGGCCCCAUAACUAAAGACCc -3' miRNA: 3'- -GGCCGGUCCGGGGUAUUGAUUUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 102882 | 0.82 | 0.306814 |
Target: 5'- gUGGCCGGGCCCCAguuugcGCUuacGGACCu -3' miRNA: 3'- gGCCGGUCCGGGGUau----UGAuu-UCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 155203 | 0.8 | 0.375898 |
Target: 5'- cUCGGCCAguGGCCCCGUGAUgAAGGugUa -3' miRNA: 3'- -GGCCGGU--CCGGGGUAUUGaUUUCugG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 167595 | 0.77 | 0.541712 |
Target: 5'- -aGGCCGGGCCUCcc--CUGGGGGCCu -3' miRNA: 3'- ggCCGGUCCGGGGuauuGAUUUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 164497 | 0.76 | 0.571989 |
Target: 5'- -gGGCCAaagGGaCCCCAUGGCccaaGAGGACCg -3' miRNA: 3'- ggCCGGU---CC-GGGGUAUUGa---UUUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 169459 | 0.77 | 0.541712 |
Target: 5'- -aGGCCGGGCCUCcc--CUGGGGGCCu -3' miRNA: 3'- ggCCGGUCCGGGGuauuGAUUUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 46327 | 0.79 | 0.464052 |
Target: 5'- cUCGGCCGGGCuucugaccagCCgGUAGgUGAGGACCg -3' miRNA: 3'- -GGCCGGUCCG----------GGgUAUUgAUUUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 15725 | 1.13 | 0.00351 |
Target: 5'- cCCGGCCAGGCCCCAUAACUAAAGACCc -3' miRNA: 3'- -GGCCGGUCCGGGGUAUUGAUUUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 170390 | 0.77 | 0.541712 |
Target: 5'- -aGGCCGGGCCUCcc--CUGGGGGCCu -3' miRNA: 3'- ggCCGGUCCGGGGuauuGAUUUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 18803 | 1.13 | 0.00351 |
Target: 5'- cCCGGCCAGGCCCCAUAACUAAAGACCc -3' miRNA: 3'- -GGCCGGUCCGGGGUAUUGAUUUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 147063 | 0.79 | 0.454746 |
Target: 5'- -gGGCCAGGUCCCGgcgUAGggAAAGGCCa -3' miRNA: 3'- ggCCGGUCCGGGGU---AUUgaUUUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 4367 | 0.77 | 0.561845 |
Target: 5'- gUGGCCAcGGCCCCGcgGGCUccccAGGCCg -3' miRNA: 3'- gGCCGGU-CCGGGGUa-UUGAuu--UCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 98556 | 0.76 | 0.592399 |
Target: 5'- gCCGGuCCAGGgCCCA-AGC-GAAGGCCu -3' miRNA: 3'- -GGCC-GGUCCgGGGUaUUGaUUUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 21881 | 1.13 | 0.00351 |
Target: 5'- cCCGGCCAGGCCCCAUAACUAAAGACCc -3' miRNA: 3'- -GGCCGGUCCGGGGUAUUGAUUUCUGG- -5' |
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28990 | 5' | -53 | NC_006146.1 | + | 34057 | 0.85 | 0.20364 |
Target: 5'- gCCGGCCggGGGUCCCGUGGCacGGGGCCg -3' miRNA: 3'- -GGCCGG--UCCGGGGUAUUGauUUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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