miRNA display CGI


Results 41 - 60 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28990 5' -53 NC_006146.1 + 56949 0.66 0.98647
Target:  5'- cCUGGCCAcGGCagCAU-ACUcucaAGAGACCc -3'
miRNA:   3'- -GGCCGGU-CCGggGUAuUGA----UUUCUGG- -5'
28990 5' -53 NC_006146.1 + 137175 0.66 0.98647
Target:  5'- aCCGGaCCGGaggaGCUCCAgAACggggguAGGCCg -3'
miRNA:   3'- -GGCC-GGUC----CGGGGUaUUGauu---UCUGG- -5'
28990 5' -53 NC_006146.1 + 62528 0.66 0.98647
Target:  5'- cCCGG--GGGCUuuGUuAUUAAAGGCCa -3'
miRNA:   3'- -GGCCggUCCGGggUAuUGAUUUCUGG- -5'
28990 5' -53 NC_006146.1 + 108972 0.66 0.98647
Target:  5'- aCCGGgCCcgugaAGGCCUCGg----AGGGACCc -3'
miRNA:   3'- -GGCC-GG-----UCCGGGGUauugaUUUCUGG- -5'
28990 5' -53 NC_006146.1 + 125002 0.66 0.98647
Target:  5'- aCCGGCCGGGCgcugagaaauCUCAUGccCUAcGGAaCCc -3'
miRNA:   3'- -GGCCGGUCCG----------GGGUAUu-GAUuUCU-GG- -5'
28990 5' -53 NC_006146.1 + 123509 0.66 0.986307
Target:  5'- cCUGGCCAcGGucgaCCCCAggcgggucgcgggUGGCaaGGAGACCg -3'
miRNA:   3'- -GGCCGGU-CC----GGGGU-------------AUUGa-UUUCUGG- -5'
28990 5' -53 NC_006146.1 + 137366 0.66 0.986307
Target:  5'- -gGGCCAGGCaagccgggcacaaCCUAgggagGGAGGCCg -3'
miRNA:   3'- ggCCGGUCCG-------------GGGUauugaUUUCUGG- -5'
28990 5' -53 NC_006146.1 + 157697 0.66 0.984764
Target:  5'- gCGGCUgaacccgaggAGGCgCCCGgAGC--GAGGCCg -3'
miRNA:   3'- gGCCGG----------UCCG-GGGUaUUGauUUCUGG- -5'
28990 5' -53 NC_006146.1 + 61611 0.66 0.984764
Target:  5'- gCGGCCGGGgccgagaucccUCCCA--GCUAc-GACCu -3'
miRNA:   3'- gGCCGGUCC-----------GGGGUauUGAUuuCUGG- -5'
28990 5' -53 NC_006146.1 + 129557 0.66 0.984764
Target:  5'- aCC-GCCAGGCCCU--------GGGCCa -3'
miRNA:   3'- -GGcCGGUCCGGGGuauugauuUCUGG- -5'
28990 5' -53 NC_006146.1 + 59878 0.66 0.984764
Target:  5'- --cGCCAucaGCUCCGU-GCUAAAGGCCc -3'
miRNA:   3'- ggcCGGUc--CGGGGUAuUGAUUUCUGG- -5'
28990 5' -53 NC_006146.1 + 142066 0.66 0.984764
Target:  5'- cCCGGgCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3'
miRNA:   3'- -GGCC-GG----UCCGGGGua-UUGAU----UUCUGG- -5'
28990 5' -53 NC_006146.1 + 142690 0.66 0.984764
Target:  5'- uCCGGCCgccggaGGGCucuaaCCCGUcuCUGuccacuagagGGGACCg -3'
miRNA:   3'- -GGCCGG------UCCG-----GGGUAuuGAU----------UUCUGG- -5'
28990 5' -53 NC_006146.1 + 145144 0.66 0.984764
Target:  5'- cCCGGgCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3'
miRNA:   3'- -GGCC-GG----UCCGGGGua-UUGAU----UUCUGG- -5'
28990 5' -53 NC_006146.1 + 148222 0.66 0.984764
Target:  5'- cCCGGgCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3'
miRNA:   3'- -GGCC-GG----UCCGGGGua-UUGAU----UUCUGG- -5'
28990 5' -53 NC_006146.1 + 151300 0.66 0.984764
Target:  5'- cCCGGgCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3'
miRNA:   3'- -GGCC-GG----UCCGGGGua-UUGAU----UUCUGG- -5'
28990 5' -53 NC_006146.1 + 154378 0.66 0.984764
Target:  5'- cCCGGgCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3'
miRNA:   3'- -GGCC-GG----UCCGGGGua-UUGAU----UUCUGG- -5'
28990 5' -53 NC_006146.1 + 157456 0.66 0.984764
Target:  5'- cCCGGgCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3'
miRNA:   3'- -GGCC-GG----UCCGGGGua-UUGAU----UUCUGG- -5'
28990 5' -53 NC_006146.1 + 16697 0.66 0.985465
Target:  5'- gCCaGCCAGacgcagguccacgacGCCCCGggguggauACUGuGGACCu -3'
miRNA:   3'- -GGcCGGUC---------------CGGGGUau------UGAUuUCUGG- -5'
28990 5' -53 NC_006146.1 + 112582 0.66 0.986307
Target:  5'- gCUGGCCAGGguggaguucuccaCCCCGgcgaAGCgcaugAAGGGCg -3'
miRNA:   3'- -GGCCGGUCC-------------GGGGUa---UUGa----UUUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.