Results 41 - 60 of 590 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28990 | 5' | -53 | NC_006146.1 | + | 93604 | 0.74 | 0.705081 |
Target: 5'- aCCcGCCGGGCUCCuggGGCUGcuguccuccccgGAGGCCg -3' miRNA: 3'- -GGcCGGUCCGGGGua-UUGAU------------UUCUGG- -5' |
|||||||
28990 | 5' | -53 | NC_006146.1 | + | 99662 | 0.76 | 0.582176 |
Target: 5'- cCCcGCCAGGCCCCAgGAgUu--GACCa -3' miRNA: 3'- -GGcCGGUCCGGGGUaUUgAuuuCUGG- -5' |
|||||||
28990 | 5' | -53 | NC_006146.1 | + | 18803 | 1.13 | 0.00351 |
Target: 5'- cCCGGCCAGGCCCCAUAACUAAAGACCc -3' miRNA: 3'- -GGCCGGUCCGGGGUAUUGAUUUCUGG- -5' |
|||||||
28990 | 5' | -53 | NC_006146.1 | + | 53514 | 0.74 | 0.694972 |
Target: 5'- uCUGGCUgcGGGCCgCGcGugUGAAGGCCg -3' miRNA: 3'- -GGCCGG--UCCGGgGUaUugAUUUCUGG- -5' |
|||||||
28990 | 5' | -53 | NC_006146.1 | + | 15725 | 1.13 | 0.00351 |
Target: 5'- cCCGGCCAGGCCCCAUAACUAAAGACCc -3' miRNA: 3'- -GGCCGGUCCGGGGUAUUGAUUUCUGG- -5' |
|||||||
28990 | 5' | -53 | NC_006146.1 | + | 110106 | 0.71 | 0.835828 |
Target: 5'- uCCGGaCCAGGCCCU--------GGACCu -3' miRNA: 3'- -GGCC-GGUCCGGGGuauugauuUCUGG- -5' |
|||||||
28990 | 5' | -53 | NC_006146.1 | + | 24958 | 1.13 | 0.00351 |
Target: 5'- cCCGGCCAGGCCCCAUAACUAAAGACCc -3' miRNA: 3'- -GGCCGGUCCGGGGUAUUGAUUUCUGG- -5' |
|||||||
28990 | 5' | -53 | NC_006146.1 | + | 65715 | 0.72 | 0.827433 |
Target: 5'- cCCGGCUccccGGCCCCGgucACUGGacGGugCg -3' miRNA: 3'- -GGCCGGu---CCGGGGUau-UGAUU--UCugG- -5' |
|||||||
28990 | 5' | -53 | NC_006146.1 | + | 150996 | 0.72 | 0.818858 |
Target: 5'- aUGuGCCGGGCCCUGUccagGACguAGGGCCa -3' miRNA: 3'- gGC-CGGUCCGGGGUA----UUGauUUCUGG- -5' |
|||||||
28990 | 5' | -53 | NC_006146.1 | + | 94635 | 0.73 | 0.782924 |
Target: 5'- -gGGCCGGGUCCaugAUGGCcgcccUGGGGACCa -3' miRNA: 3'- ggCCGGUCCGGGg--UAUUG-----AUUUCUGG- -5' |
|||||||
28990 | 5' | -53 | NC_006146.1 | + | 47674 | 0.73 | 0.754506 |
Target: 5'- gCGGCCAgGGUCUCGUGGaugGAGGACUu -3' miRNA: 3'- gGCCGGU-CCGGGGUAUUga-UUUCUGG- -5' |
|||||||
28990 | 5' | -53 | NC_006146.1 | + | 73431 | 0.73 | 0.734998 |
Target: 5'- -aGGCCGGGCCCCuUGGCaccgGAuGACa -3' miRNA: 3'- ggCCGGUCCGGGGuAUUGa---UUuCUGg -5' |
|||||||
28990 | 5' | -53 | NC_006146.1 | + | 56129 | 0.74 | 0.715128 |
Target: 5'- gUGGCCgcGGGCCCCGaGACcgAGAGcACCu -3' miRNA: 3'- gGCCGG--UCCGGGGUaUUGa-UUUC-UGG- -5' |
|||||||
28990 | 5' | -53 | NC_006146.1 | + | 27993 | 0.75 | 0.664361 |
Target: 5'- cCCGGCCcucgAGGCCUCAcAGCcc-AGGCCa -3' miRNA: 3'- -GGCCGG----UCCGGGGUaUUGauuUCUGG- -5' |
|||||||
28990 | 5' | -53 | NC_006146.1 | + | 18760 | 0.75 | 0.664361 |
Target: 5'- cCCGGCCcucgAGGCCUCAcAGCcc-AGGCCa -3' miRNA: 3'- -GGCCGG----UCCGGGGUaUUGauuUCUGG- -5' |
|||||||
28990 | 5' | -53 | NC_006146.1 | + | 49561 | 0.75 | 0.633512 |
Target: 5'- gCCGGCCAGGCCCa---GCau--GGCCu -3' miRNA: 3'- -GGCCGGUCCGGGguauUGauuuCUGG- -5' |
|||||||
28990 | 5' | -53 | NC_006146.1 | + | 109583 | 0.76 | 0.592399 |
Target: 5'- gCCGGCUAGGCCaCCcgGGCaGGAcGCCg -3' miRNA: 3'- -GGCCGGUCCGG-GGuaUUGaUUUcUGG- -5' |
|||||||
28990 | 5' | -53 | NC_006146.1 | + | 170390 | 0.77 | 0.541712 |
Target: 5'- -aGGCCGGGCCUCcc--CUGGGGGCCu -3' miRNA: 3'- ggCCGGUCCGGGGuauuGAUUUCUGG- -5' |
|||||||
28990 | 5' | -53 | NC_006146.1 | + | 167595 | 0.77 | 0.541712 |
Target: 5'- -aGGCCGGGCCUCcc--CUGGGGGCCu -3' miRNA: 3'- ggCCGGUCCGGGGuauuGAUUUCUGG- -5' |
|||||||
28990 | 5' | -53 | NC_006146.1 | + | 102882 | 0.82 | 0.306814 |
Target: 5'- gUGGCCGGGCCCCAguuugcGCUuacGGACCu -3' miRNA: 3'- gGCCGGUCCGGGGUau----UGAuu-UCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home