miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28996 5' -52.4 NC_006146.1 + 127139 0.66 0.981514
Target:  5'- gUCCCc-UCUGCGGCCCacuccucUCUGUc- -3'
miRNA:   3'- -AGGGauAGACGUCGGGaaa----AGACGuc -5'
28996 5' -52.4 NC_006146.1 + 159651 0.66 0.9793
Target:  5'- cUCCUUGUCguacaGCGGgaCCCUaaagCUGCAGa -3'
miRNA:   3'- -AGGGAUAGa----CGUC--GGGAaaa-GACGUC- -5'
28996 5' -52.4 NC_006146.1 + 15434 0.66 0.976895
Target:  5'- gCCCgg-CUGCAGUCCUgccuggCgcaGCAGa -3'
miRNA:   3'- aGGGauaGACGUCGGGAaaa---Ga--CGUC- -5'
28996 5' -52.4 NC_006146.1 + 121886 0.66 0.970891
Target:  5'- cCCCggagaacgccCUGCGGCuCCUagccggUCUGCAGa -3'
miRNA:   3'- aGGGaua-------GACGUCG-GGAaa----AGACGUC- -5'
28996 5' -52.4 NC_006146.1 + 123617 0.67 0.968453
Target:  5'- gUCCCgg-CUGCAGgacg-UUCUGCAGg -3'
miRNA:   3'- -AGGGauaGACGUCgggaaAAGACGUC- -5'
28996 5' -52.4 NC_006146.1 + 127778 0.67 0.962089
Target:  5'- gCCCUG-CUGCAGCUCUUgaaauuuaggaaGCAGg -3'
miRNA:   3'- aGGGAUaGACGUCGGGAAaaga--------CGUC- -5'
28996 5' -52.4 NC_006146.1 + 42467 0.67 0.960643
Target:  5'- cUCCCgcccgGUCUGCGGCCCggaucacccuccccUggccgugUUCUGCc- -3'
miRNA:   3'- -AGGGa----UAGACGUCGGG--------------Aa------AAGACGuc -5'
28996 5' -52.4 NC_006146.1 + 17460 0.67 0.957639
Target:  5'- gCCCUGUCUagggccgggagagGCAGCCCcgag--GCGGg -3'
miRNA:   3'- aGGGAUAGA-------------CGUCGGGaaaagaCGUC- -5'
28996 5' -52.4 NC_006146.1 + 20538 0.67 0.957639
Target:  5'- gCCCUGUCUagggccgggagagGCAGCCCcgag--GCGGg -3'
miRNA:   3'- aGGGAUAGA-------------CGUCGGGaaaagaCGUC- -5'
28996 5' -52.4 NC_006146.1 + 23616 0.67 0.957639
Target:  5'- gCCCUGUCUagggccgggagagGCAGCCCcgag--GCGGg -3'
miRNA:   3'- aGGGAUAGA-------------CGUCGGGaaaagaCGUC- -5'
28996 5' -52.4 NC_006146.1 + 14382 0.67 0.957639
Target:  5'- gCCCUGUCUagggccgggagagGCAGCCCcgag--GCGGg -3'
miRNA:   3'- aGGGAUAGA-------------CGUCGGGaaaagaCGUC- -5'
28996 5' -52.4 NC_006146.1 + 26694 0.67 0.957639
Target:  5'- gCCCUGUCUagggccgggagagGCAGCCCcgag--GCGGg -3'
miRNA:   3'- aGGGAUAGA-------------CGUCGGGaaaagaCGUC- -5'
28996 5' -52.4 NC_006146.1 + 62928 0.67 0.954075
Target:  5'- gCCCUGUCUGUggucuccagGGCCCUggaggUCU-CGGc -3'
miRNA:   3'- aGGGAUAGACG---------UCGGGAaa---AGAcGUC- -5'
28996 5' -52.4 NC_006146.1 + 1689 0.68 0.949884
Target:  5'- aUCCUUAaguUCUGCAgGCUCUgcugUUUCUGCu- -3'
miRNA:   3'- -AGGGAU---AGACGU-CGGGA----AAAGACGuc -5'
28996 5' -52.4 NC_006146.1 + 161334 0.69 0.900824
Target:  5'- aCCCUGUCUGUucaGGCCaagaggUCUGUAu -3'
miRNA:   3'- aGGGAUAGACG---UCGGgaaa--AGACGUc -5'
28996 5' -52.4 NC_006146.1 + 131120 0.7 0.89411
Target:  5'- gUCCCUAUCUccaGcCAGCaCCUgccgcgUCUGCGa -3'
miRNA:   3'- -AGGGAUAGA---C-GUCG-GGAaa----AGACGUc -5'
28996 5' -52.4 NC_006146.1 + 8563 0.7 0.856964
Target:  5'- gCUCauagCUGCAGCCCggg-CUGCAGc -3'
miRNA:   3'- aGGGaua-GACGUCGGGaaaaGACGUC- -5'
28996 5' -52.4 NC_006146.1 + 85277 0.72 0.808989
Target:  5'- cCCCUGUCUGCcucucuGGCCCUUugccccggugccagcUUCcgagGCGGg -3'
miRNA:   3'- aGGGAUAGACG------UCGGGAA---------------AAGa---CGUC- -5'
28996 5' -52.4 NC_006146.1 + 101933 0.73 0.747706
Target:  5'- cUCCCUAUCaGCGGCUCUgccCUGCc- -3'
miRNA:   3'- -AGGGAUAGaCGUCGGGAaaaGACGuc -5'
28996 5' -52.4 NC_006146.1 + 60857 0.74 0.686176
Target:  5'- uUCCCUGUUauacaauagcaUGCAGCCC----CUGCAGa -3'
miRNA:   3'- -AGGGAUAG-----------ACGUCGGGaaaaGACGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.