miRNA display CGI


Results 41 - 60 of 280 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29002 3' -56.7 NC_006146.1 + 57194 0.66 0.902392
Target:  5'- cCGUCCc--GGCUgccgcCGCCGuCCCCGGGc -3'
miRNA:   3'- cGCGGGuuaUCGA-----GUGGUuGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 67798 0.66 0.902392
Target:  5'- gGCGgCCA--GGCUCugCcccGCCUCGGa -3'
miRNA:   3'- -CGCgGGUuaUCGAGugGu--UGGGGCCc -5'
29002 3' -56.7 NC_006146.1 + 155578 0.66 0.902392
Target:  5'- gGCGCCCGccaggGGCaCACCGgggcugGCCuCCGGc -3'
miRNA:   3'- -CGCGGGUua---UCGaGUGGU------UGG-GGCCc -5'
29002 3' -56.7 NC_006146.1 + 100736 0.66 0.902392
Target:  5'- -gGCCuCGccGGC-CACCAgcGCCCCGGc -3'
miRNA:   3'- cgCGG-GUuaUCGaGUGGU--UGGGGCCc -5'
29002 3' -56.7 NC_006146.1 + 155779 0.66 0.902392
Target:  5'- cCGCCgCAGaagAGC-CGCUcgguGGCCCUGGGg -3'
miRNA:   3'- cGCGG-GUUa--UCGaGUGG----UUGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 151784 0.66 0.901771
Target:  5'- cUGCCCAGUAGCUUgaugacgauGCCAcacggcacuauguACCCCu-- -3'
miRNA:   3'- cGCGGGUUAUCGAG---------UGGU-------------UGGGGccc -5'
29002 3' -56.7 NC_006146.1 + 105845 0.66 0.900523
Target:  5'- cCGCCgAGUAGacgcagugccgcucCUCGCagugGGCCCUGGGa -3'
miRNA:   3'- cGCGGgUUAUC--------------GAGUGg---UUGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 11989 0.66 0.898634
Target:  5'- cUGCCaggggcagaagAGCUCGCUGACUCCGGu -3'
miRNA:   3'- cGCGGguua-------UCGAGUGGUUGGGGCCc -5'
29002 3' -56.7 NC_006146.1 + 160103 0.66 0.896084
Target:  5'- gGUGCCCAgcGUGGCg-ACCucCCUCaGGGg -3'
miRNA:   3'- -CGCGGGU--UAUCGagUGGuuGGGG-CCC- -5'
29002 3' -56.7 NC_006146.1 + 132439 0.66 0.896084
Target:  5'- -aGCCCgGAUGGCaC-CCGucACCCCGGa -3'
miRNA:   3'- cgCGGG-UUAUCGaGuGGU--UGGGGCCc -5'
29002 3' -56.7 NC_006146.1 + 99127 0.66 0.896084
Target:  5'- -aGCCCuaacGC-CACCAGCCCCa-- -3'
miRNA:   3'- cgCGGGuuauCGaGUGGUUGGGGccc -5'
29002 3' -56.7 NC_006146.1 + 135721 0.66 0.896084
Target:  5'- cGCuGCCCGuccuggAGCUCgggGCCGggggccggguGCCCCuGGGu -3'
miRNA:   3'- -CG-CGGGUua----UCGAG---UGGU----------UGGGG-CCC- -5'
29002 3' -56.7 NC_006146.1 + 153290 0.66 0.896084
Target:  5'- cUGCCUuuucuGCUCcaggcACCAGgCCCGGGc -3'
miRNA:   3'- cGCGGGuuau-CGAG-----UGGUUgGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 35574 0.66 0.896084
Target:  5'- gGCGCCCGu--GcCUCcccucagaGCCAuucCCCUGGGu -3'
miRNA:   3'- -CGCGGGUuauC-GAG--------UGGUu--GGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 64225 0.66 0.896084
Target:  5'- -aGCCCcagGGaUC-CCGugCCCGGGg -3'
miRNA:   3'- cgCGGGuuaUCgAGuGGUugGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 53108 0.66 0.896084
Target:  5'- -aGUCCGGaGGCggcCCGGCCCgGGGg -3'
miRNA:   3'- cgCGGGUUaUCGaguGGUUGGGgCCC- -5'
29002 3' -56.7 NC_006146.1 + 103575 0.66 0.895441
Target:  5'- uCGCCCGGgccugggccgGGCUCAgCGcggacguGgCCCGGGa -3'
miRNA:   3'- cGCGGGUUa---------UCGAGUgGU-------UgGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 44323 0.67 0.892193
Target:  5'- aGCGUgacuucgaaaaacagUCGAUAGUccgUgACCGcggGCCCCGGGg -3'
miRNA:   3'- -CGCG---------------GGUUAUCG---AgUGGU---UGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 106572 0.67 0.889554
Target:  5'- uUGCCCAAUgcugagAGCUUACUgccgccaguacGGCCCCaGGc -3'
miRNA:   3'- cGCGGGUUA------UCGAGUGG-----------UUGGGGcCC- -5'
29002 3' -56.7 NC_006146.1 + 74742 0.67 0.889554
Target:  5'- aGgGaCCCAGUGa---GCCAGCCuCCGGGg -3'
miRNA:   3'- -CgC-GGGUUAUcgagUGGUUGG-GGCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.