miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29002 5' -55.3 NC_006146.1 + 88831 0.76 0.423801
Target:  5'- aCUCCCAGCACcugaAGCAGGcccuuggUGGCCAa -3'
miRNA:   3'- -GAGGGUCGUGca--UCGUCCa------AUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 90541 0.67 0.90635
Target:  5'- cCUCCCGGaGCGguggAGCAGGgc--CCGGg -3'
miRNA:   3'- -GAGGGUCgUGCa---UCGUCCaaucGGUC- -5'
29002 5' -55.3 NC_006146.1 + 99159 0.7 0.751007
Target:  5'- --aCCGGCAgGUGGCGGag-GGCCAGc -3'
miRNA:   3'- gagGGUCGUgCAUCGUCcaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 99554 0.67 0.893443
Target:  5'- uUCCCacuGGCACcccAGCAGGUggaaaGGCCAa -3'
miRNA:   3'- gAGGG---UCGUGca-UCGUCCAa----UCGGUc -5'
29002 5' -55.3 NC_006146.1 + 100216 0.66 0.920578
Target:  5'- uUCCCAGCGCagaaaguucagcuccGUGGCAGuGggGGCg-- -3'
miRNA:   3'- gAGGGUCGUG---------------CAUCGUC-CaaUCGguc -5'
29002 5' -55.3 NC_006146.1 + 102552 0.66 0.923918
Target:  5'- uCUCCaCAGagGCGUccagcAGCAGGUccgAGCCGa -3'
miRNA:   3'- -GAGG-GUCg-UGCA-----UCGUCCAa--UCGGUc -5'
29002 5' -55.3 NC_006146.1 + 104558 0.71 0.681019
Target:  5'- aCUCCCuGCACGU---GGGcUGGCCAGc -3'
miRNA:   3'- -GAGGGuCGUGCAucgUCCaAUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 105242 0.7 0.77019
Target:  5'- uCUCCUGcGCACGUcGCAGGgucucuagGGCCAc -3'
miRNA:   3'- -GAGGGU-CGUGCAuCGUCCaa------UCGGUc -5'
29002 5' -55.3 NC_006146.1 + 106405 0.69 0.788873
Target:  5'- -gCCUcGCAgCGUGGCcGGUUGGCCGa -3'
miRNA:   3'- gaGGGuCGU-GCAUCGuCCAAUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 108321 0.69 0.815801
Target:  5'- aUCuCCAGCGag-AGCAGGUUGGCa-- -3'
miRNA:   3'- gAG-GGUCGUgcaUCGUCCAAUCGguc -5'
29002 5' -55.3 NC_006146.1 + 108543 0.66 0.912447
Target:  5'- cCUCuCCGGCGCGgcGUuGGagUGGCUGGg -3'
miRNA:   3'- -GAG-GGUCGUGCauCGuCCa-AUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 109589 0.66 0.93442
Target:  5'- gUCgUAGCACuUGGaCAGGacGGCCAGg -3'
miRNA:   3'- gAGgGUCGUGcAUC-GUCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 110094 0.68 0.864879
Target:  5'- gUCCCuGCuuAUGUAGUu-GUUGGCCAGg -3'
miRNA:   3'- gAGGGuCG--UGCAUCGucCAAUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 110984 0.82 0.20134
Target:  5'- -aCCCAGCuCGUagccgcgcaccAGCAGGUUGGCCAGc -3'
miRNA:   3'- gaGGGUCGuGCA-----------UCGUCCAAUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 111896 0.7 0.751007
Target:  5'- -aCCaggCAGCGCGggaGGCAGauGUUGGCCAGg -3'
miRNA:   3'- gaGG---GUCGUGCa--UCGUC--CAAUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 112488 0.66 0.93442
Target:  5'- -cCCCGGCGCGcucauagagaUAGCGGuccaggGGCCGGu -3'
miRNA:   3'- gaGGGUCGUGC----------AUCGUCcaa---UCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 113810 0.67 0.893443
Target:  5'- gUCgCGGgGCuGUcguacAGCAGGUUGGCCAu -3'
miRNA:   3'- gAGgGUCgUG-CA-----UCGUCCAAUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 114241 0.66 0.923918
Target:  5'- -gCCCGGCACcu--CAGGgagGGCCAGc -3'
miRNA:   3'- gaGGGUCGUGcaucGUCCaa-UCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 115360 0.67 0.900014
Target:  5'- uUCCUGGCcgGCGUGGCGGcggAGCUGGa -3'
miRNA:   3'- gAGGGUCG--UGCAUCGUCcaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 115542 0.7 0.77019
Target:  5'- gUCCCGcGCGCgGUGGCGGG--GGCUGGa -3'
miRNA:   3'- gAGGGU-CGUG-CAUCGUCCaaUCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.