miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29002 5' -55.3 NC_006146.1 + 9069 0.68 0.841207
Target:  5'- uCUCCCacGGgGCGUGGCccaaaAGGaaAGCCGGg -3'
miRNA:   3'- -GAGGG--UCgUGCAUCG-----UCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 12014 0.71 0.695278
Target:  5'- aCUCCggugcccgagaccggCAGCuACGUGGCGGGUgcGGCCAc -3'
miRNA:   3'- -GAGG---------------GUCG-UGCAUCGUCCAa-UCGGUc -5'
29002 5' -55.3 NC_006146.1 + 21972 0.68 0.857193
Target:  5'- aUUCCAGCcgagaaGUGGCGGGgaAGCUGGu -3'
miRNA:   3'- gAGGGUCGug----CAUCGUCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 23964 0.69 0.82445
Target:  5'- -cCCCGGguCG-GGUGGGggAGCCGGa -3'
miRNA:   3'- gaGGGUCguGCaUCGUCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 27336 0.66 0.93442
Target:  5'- cCUCCaaaaaCAGCGgGUGGCGcGGcaaGGCCGGg -3'
miRNA:   3'- -GAGG-----GUCGUgCAUCGU-CCaa-UCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 28037 0.73 0.598718
Target:  5'- -aCCCAGC-CGgagGGCAGGUggcugcaaUAGCCAa -3'
miRNA:   3'- gaGGGUCGuGCa--UCGUCCA--------AUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 28229 0.71 0.670783
Target:  5'- -aCCCAGC-CGgagGGCAGGUggcugcgaUAGCCGa -3'
miRNA:   3'- gaGGGUCGuGCa--UCGUCCA--------AUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 32127 1.09 0.003168
Target:  5'- uCUCCCAGCACGUAGCAGGUUAGCCAGg -3'
miRNA:   3'- -GAGGGUCGUGCAUCGUCCAAUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 34159 0.66 0.918303
Target:  5'- -cCCCGGCGaggGUGGgGGGUgcgcccccAGCCGGa -3'
miRNA:   3'- gaGGGUCGUg--CAUCgUCCAa-------UCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 40390 0.72 0.629609
Target:  5'- -gCCCGGCGCGUAGUagccucccgcgGGGgcaaagUAGCCAc -3'
miRNA:   3'- gaGGGUCGUGCAUCG-----------UCCa-----AUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 41077 0.67 0.872353
Target:  5'- --aCgGGgGCGUGGCGGGUgGGCCGc -3'
miRNA:   3'- gagGgUCgUGCAUCGUCCAaUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 43356 0.66 0.93442
Target:  5'- -gCgCAGCcCGUGGCAGGgggUGGCUu- -3'
miRNA:   3'- gaGgGUCGuGCAUCGUCCa--AUCGGuc -5'
29002 5' -55.3 NC_006146.1 + 43585 0.68 0.832921
Target:  5'- uUCCCGGggaGCGgGGCGGGa-GGCCGGg -3'
miRNA:   3'- gAGGGUCg--UGCaUCGUCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 49829 0.68 0.832921
Target:  5'- -aUCUGGCACGUGugccGCAGGcgGGUCAGg -3'
miRNA:   3'- gaGGGUCGUGCAU----CGUCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 51404 0.66 0.912447
Target:  5'- aUCCCGGCaaaauuGCGaccGCAGG-UGGCUAGu -3'
miRNA:   3'- gAGGGUCG------UGCau-CGUCCaAUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 68093 0.66 0.92929
Target:  5'- -cCCCcGCGCGauccAGguGGgcGGCCAGc -3'
miRNA:   3'- gaGGGuCGUGCa---UCguCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 70227 0.66 0.93442
Target:  5'- --aCCAGCGCGUugaaguAGCAGGgguaccCCAGg -3'
miRNA:   3'- gagGGUCGUGCA------UCGUCCaauc--GGUC- -5'
29002 5' -55.3 NC_006146.1 + 70861 0.7 0.751007
Target:  5'- uUCCCGGCGC--AGguGGUUuGUCAGg -3'
miRNA:   3'- gAGGGUCGUGcaUCguCCAAuCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 71163 0.69 0.788873
Target:  5'- --aCCGGCACuGUGGCuuGGGUgguggUAGCCGGu -3'
miRNA:   3'- gagGGUCGUG-CAUCG--UCCA-----AUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 75756 0.66 0.918303
Target:  5'- gUCUCAGguCGccgGGCuucGGUUGGCCAc -3'
miRNA:   3'- gAGGGUCguGCa--UCGu--CCAAUCGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.