miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29002 5' -55.3 NC_006146.1 + 32127 1.09 0.003168
Target:  5'- uCUCCCAGCACGUAGCAGGUUAGCCAGg -3'
miRNA:   3'- -GAGGGUCGUGCAUCGUCCAAUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 168239 0.67 0.900014
Target:  5'- --gCCGGCGCcu-GCAGGgggGGCCGGc -3'
miRNA:   3'- gagGGUCGUGcauCGUCCaa-UCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 90541 0.67 0.90635
Target:  5'- cCUCCCGGaGCGguggAGCAGGgc--CCGGg -3'
miRNA:   3'- -GAGGGUCgUGCa---UCGUCCaaucGGUC- -5'
29002 5' -55.3 NC_006146.1 + 170187 0.66 0.939307
Target:  5'- gCUCCCgAGgGCGgggccggggccUGGCGGG--GGCCAGc -3'
miRNA:   3'- -GAGGG-UCgUGC-----------AUCGUCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 99159 0.7 0.751007
Target:  5'- --aCCGGCAgGUGGCGGag-GGCCAGc -3'
miRNA:   3'- gagGGUCGUgCAUCGUCcaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 105242 0.7 0.77019
Target:  5'- uCUCCUGcGCACGUcGCAGGgucucuagGGCCAc -3'
miRNA:   3'- -GAGGGU-CGUGCAuCGUCCaa------UCGGUc -5'
29002 5' -55.3 NC_006146.1 + 71163 0.69 0.788873
Target:  5'- --aCCGGCACuGUGGCuuGGGUgguggUAGCCGGu -3'
miRNA:   3'- gagGGUCGUG-CAUCG--UCCA-----AUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 157604 0.69 0.806983
Target:  5'- -gCCCAGCACGUGG-GGG-UAGUCGc -3'
miRNA:   3'- gaGGGUCGUGCAUCgUCCaAUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 170441 0.68 0.832921
Target:  5'- -gCCCGGCGCGUGcCGGGggAcCCGGg -3'
miRNA:   3'- gaGGGUCGUGCAUcGUCCaaUcGGUC- -5'
29002 5' -55.3 NC_006146.1 + 167307 0.67 0.900014
Target:  5'- --gCCGGCGCcu-GCAGGgggGGCCGGc -3'
miRNA:   3'- gagGGUCGUGcauCGUCCaa-UCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 41077 0.67 0.872353
Target:  5'- --aCgGGgGCGUGGCGGGUgGGCCGc -3'
miRNA:   3'- gagGgUCgUGCAUCGUCCAaUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 169510 0.68 0.832921
Target:  5'- -gCCCGGCGCGUGcCGGGggAcCCGGg -3'
miRNA:   3'- gaGGGUCGUGCAUcGUCCaaUcGGUC- -5'
29002 5' -55.3 NC_006146.1 + 88831 0.76 0.423801
Target:  5'- aCUCCCAGCACcugaAGCAGGcccuuggUGGCCAa -3'
miRNA:   3'- -GAGGGUCGUGca--UCGUCCa------AUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 119809 0.67 0.88664
Target:  5'- aUCCggCAGCGCaaGGCGGGggaccGGCCAGa -3'
miRNA:   3'- gAGG--GUCGUGcaUCGUCCaa---UCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 170512 0.75 0.48871
Target:  5'- -cCCCAGCGCGcGGCGGGcggGGCCuGa -3'
miRNA:   3'- gaGGGUCGUGCaUCGUCCaa-UCGGuC- -5'
29002 5' -55.3 NC_006146.1 + 168578 0.68 0.832921
Target:  5'- -gCCCGGCGCGUGcCGGGggAcCCGGg -3'
miRNA:   3'- gaGGGUCGUGCAUcGUCCaaUcGGUC- -5'
29002 5' -55.3 NC_006146.1 + 155855 0.67 0.900014
Target:  5'- cCUCCUcGCAgGcccGGCGGGcccUGGCCAGg -3'
miRNA:   3'- -GAGGGuCGUgCa--UCGUCCa--AUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 169171 0.67 0.900014
Target:  5'- --gCCGGCGCcu-GCAGGgggGGCCGGc -3'
miRNA:   3'- gagGGUCGUGcauCGUCCaa-UCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 129494 0.72 0.654344
Target:  5'- -aCCCAGCGCGgccgucuacgucuGCGGGUUcguggagcGGCCGGa -3'
miRNA:   3'- gaGGGUCGUGCau-----------CGUCCAA--------UCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 106405 0.69 0.788873
Target:  5'- -gCCUcGCAgCGUGGCcGGUUGGCCGa -3'
miRNA:   3'- gaGGGuCGU-GCAUCGuCCAAUCGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.