miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29002 5' -55.3 NC_006146.1 + 32127 1.09 0.003168
Target:  5'- uCUCCCAGCACGUAGCAGGUUAGCCAGg -3'
miRNA:   3'- -GAGGGUCGUGCAUCGUCCAAUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 110984 0.82 0.20134
Target:  5'- -aCCCAGCuCGUagccgcgcaccAGCAGGUUGGCCAGc -3'
miRNA:   3'- gaGGGUCGuGCA-----------UCGUCCAAUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 88831 0.76 0.423801
Target:  5'- aCUCCCAGCACcugaAGCAGGcccuuggUGGCCAa -3'
miRNA:   3'- -GAGGGUCGUGca--UCGUCCa------AUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 170512 0.75 0.48871
Target:  5'- -cCCCAGCGCGcGGCGGGcggGGCCuGa -3'
miRNA:   3'- gaGGGUCGUGCaUCGUCCaa-UCGGuC- -5'
29002 5' -55.3 NC_006146.1 + 115785 0.74 0.537793
Target:  5'- -gCCgAGUACG-AGCAGG-UGGCCAGg -3'
miRNA:   3'- gaGGgUCGUGCaUCGUCCaAUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 28037 0.73 0.598718
Target:  5'- -aCCCAGC-CGgagGGCAGGUggcugcaaUAGCCAa -3'
miRNA:   3'- gaGGGUCGuGCa--UCGUCCA--------AUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 40390 0.72 0.629609
Target:  5'- -gCCCGGCGCGUAGUagccucccgcgGGGgcaaagUAGCCAc -3'
miRNA:   3'- gaGGGUCGUGCAUCG-----------UCCa-----AUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 129494 0.72 0.654344
Target:  5'- -aCCCAGCGCGgccgucuacgucuGCGGGUUcguggagcGGCCGGa -3'
miRNA:   3'- gaGGGUCGUGCau-----------CGUCCAA--------UCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 130121 0.72 0.661544
Target:  5'- gUCCCAGCAgGaugauggaguucuugGGCAGGUccacguccgUGGCCAGc -3'
miRNA:   3'- gAGGGUCGUgCa--------------UCGUCCA---------AUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 28229 0.71 0.670783
Target:  5'- -aCCCAGC-CGgagGGCAGGUggcugcgaUAGCCGa -3'
miRNA:   3'- gaGGGUCGuGCa--UCGUCCA--------AUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 104558 0.71 0.681019
Target:  5'- aCUCCCuGCACGU---GGGcUGGCCAGc -3'
miRNA:   3'- -GAGGGuCGUGCAucgUCCaAUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 12014 0.71 0.695278
Target:  5'- aCUCCggugcccgagaccggCAGCuACGUGGCGGGUgcGGCCAc -3'
miRNA:   3'- -GAGG---------------GUCG-UGCAUCGUCCAa-UCGGUc -5'
29002 5' -55.3 NC_006146.1 + 161450 0.71 0.711443
Target:  5'- -aCCCAagGCGCGUggGGCGGGUaGGCUGGu -3'
miRNA:   3'- gaGGGU--CGUGCA--UCGUCCAaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 99159 0.7 0.751007
Target:  5'- --aCCGGCAgGUGGCGGag-GGCCAGc -3'
miRNA:   3'- gagGGUCGUgCAUCGUCcaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 111896 0.7 0.751007
Target:  5'- -aCCaggCAGCGCGggaGGCAGauGUUGGCCAGg -3'
miRNA:   3'- gaGG---GUCGUGCa--UCGUC--CAAUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 70861 0.7 0.751007
Target:  5'- uUCCCGGCGC--AGguGGUUuGUCAGg -3'
miRNA:   3'- gAGGGUCGUGcaUCguCCAAuCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 105242 0.7 0.77019
Target:  5'- uCUCCUGcGCACGUcGCAGGgucucuagGGCCAc -3'
miRNA:   3'- -GAGGGU-CGUGCAuCGUCCaa------UCGGUc -5'
29002 5' -55.3 NC_006146.1 + 115542 0.7 0.77019
Target:  5'- gUCCCGcGCGCgGUGGCGGG--GGCUGGa -3'
miRNA:   3'- gAGGGU-CGUG-CAUCGUCCaaUCGGUC- -5'
29002 5' -55.3 NC_006146.1 + 106405 0.69 0.788873
Target:  5'- -gCCUcGCAgCGUGGCcGGUUGGCCGa -3'
miRNA:   3'- gaGGGuCGU-GCAUCGuCCAAUCGGUc -5'
29002 5' -55.3 NC_006146.1 + 167478 0.69 0.788873
Target:  5'- -gCCCAGCACGUAGUAuuGGcacccuGCCAc -3'
miRNA:   3'- gaGGGUCGUGCAUCGU--CCaau---CGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.