miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2901 5' -58.5 NC_001493.1 + 81255 0.66 0.762699
Target:  5'- cGUGGGucuGCUCGUGuaacAgGGCCGCCu-- -3'
miRNA:   3'- -CACCCcu-UGAGCAC----UgCCGGUGGcuu -5'
2901 5' -58.5 NC_001493.1 + 97516 0.66 0.753167
Target:  5'- -cGGGGAucugucCUCGUG-CGGCCugUuGAAg -3'
miRNA:   3'- caCCCCUu-----GAGCACuGCCGGugG-CUU- -5'
2901 5' -58.5 NC_001493.1 + 35742 0.66 0.753166
Target:  5'- -aGaGGAGgUCGUGGCGGCCAUgaCGGc -3'
miRNA:   3'- caCcCCUUgAGCACUGCCGGUG--GCUu -5'
2901 5' -58.5 NC_001493.1 + 112499 0.66 0.743528
Target:  5'- -gGGGGAGCcCGUGAggauacggGGgCGCCGAAu -3'
miRNA:   3'- caCCCCUUGaGCACUg-------CCgGUGGCUU- -5'
2901 5' -58.5 NC_001493.1 + 126365 0.68 0.673851
Target:  5'- -cGGGGAGCUCGcgcgaucgGGCGcGUC-CCGAGa -3'
miRNA:   3'- caCCCCUUGAGCa-------CUGC-CGGuGGCUU- -5'
2901 5' -58.5 NC_001493.1 + 10811 0.68 0.673851
Target:  5'- -cGGGGAGCUCGcgcgaucgGGCGcGUC-CCGAGa -3'
miRNA:   3'- caCCCCUUGAGCa-------CUGC-CGGuGGCUU- -5'
2901 5' -58.5 NC_001493.1 + 49011 0.68 0.66369
Target:  5'- gGUGGaGGAACUgGagcggcgcaUGGCGGCCGUCGAu -3'
miRNA:   3'- -CACC-CCUUGAgC---------ACUGCCGGUGGCUu -5'
2901 5' -58.5 NC_001493.1 + 27613 0.68 0.653504
Target:  5'- -aGGGGAcccgcgcggGCUCGgGAuCGGCC-CCGAu -3'
miRNA:   3'- caCCCCU---------UGAGCaCU-GCCGGuGGCUu -5'
2901 5' -58.5 NC_001493.1 + 95851 0.74 0.323025
Target:  5'- -cGGGGuuGCUCGUGACGaGCCACUc-- -3'
miRNA:   3'- caCCCCu-UGAGCACUGC-CGGUGGcuu -5'
2901 5' -58.5 NC_001493.1 + 75736 0.76 0.232397
Target:  5'- -aGGGGggUUCGUGAUGGCaccgcuCACCGGg -3'
miRNA:   3'- caCCCCuuGAGCACUGCCG------GUGGCUu -5'
2901 5' -58.5 NC_001493.1 + 28897 1.06 0.002229
Target:  5'- aGUGGGGAACUCGUGACGGCCACCGAAa -3'
miRNA:   3'- -CACCCCUUGAGCACUGCCGGUGGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.