miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29011 3' -61.9 NC_006146.1 + 44415 1.09 0.001138
Target:  5'- gCCUUCCUCGAGGGGCUCCCGGGGUCUg -3'
miRNA:   3'- -GGAAGGAGCUCCCCGAGGGCCCCAGA- -5'
29011 3' -61.9 NC_006146.1 + 45391 0.75 0.247561
Target:  5'- cCCUguUUCUgGAgGGGGCUCCgGGGGUUg -3'
miRNA:   3'- -GGA--AGGAgCU-CCCCGAGGgCCCCAGa -5'
29011 3' -61.9 NC_006146.1 + 147352 0.73 0.337003
Target:  5'- cCCUaCUUUuAGGGGCUCCUGGGGg-- -3'
miRNA:   3'- -GGAaGGAGcUCCCCGAGGGCCCCaga -5'
29011 3' -61.9 NC_006146.1 + 156586 0.73 0.337003
Target:  5'- cCCUaCUUUuAGGGGCUCCUGGGGg-- -3'
miRNA:   3'- -GGAaGGAGcUCCCCGAGGGCCCCaga -5'
29011 3' -61.9 NC_006146.1 + 153508 0.73 0.337003
Target:  5'- cCCUaCUUUuAGGGGCUCCUGGGGg-- -3'
miRNA:   3'- -GGAaGGAGcUCCCCGAGGGCCCCaga -5'
29011 3' -61.9 NC_006146.1 + 144274 0.73 0.337003
Target:  5'- cCCUaCUUUuAGGGGCUCCUGGGGg-- -3'
miRNA:   3'- -GGAaGGAGcUCCCCGAGGGCCCCaga -5'
29011 3' -61.9 NC_006146.1 + 150430 0.73 0.337003
Target:  5'- cCCUaCUUUuAGGGGCUCCUGGGGg-- -3'
miRNA:   3'- -GGAaGGAGcUCCCCGAGGGCCCCaga -5'
29011 3' -61.9 NC_006146.1 + 126787 0.72 0.389833
Target:  5'- cCCcUCCUCGccGGGCagCCGGGGcCUg -3'
miRNA:   3'- -GGaAGGAGCucCCCGagGGCCCCaGA- -5'
29011 3' -61.9 NC_006146.1 + 46879 0.71 0.39781
Target:  5'- -----gUUGAGGGGCUCCUGGGuGUCc -3'
miRNA:   3'- ggaaggAGCUCCCCGAGGGCCC-CAGa -5'
29011 3' -61.9 NC_006146.1 + 89198 0.71 0.405891
Target:  5'- --aUCCU---GGGGCUCCUGGGGUUUu -3'
miRNA:   3'- ggaAGGAgcuCCCCGAGGGCCCCAGA- -5'
29011 3' -61.9 NC_006146.1 + 94690 0.71 0.439222
Target:  5'- ---aCCUCG-GGGGUUCuuGGGGUg- -3'
miRNA:   3'- ggaaGGAGCuCCCCGAGggCCCCAga -5'
29011 3' -61.9 NC_006146.1 + 132975 0.7 0.482987
Target:  5'- --gUCCUCGGGGGGCgguggagaCCGcGGGUg- -3'
miRNA:   3'- ggaAGGAGCUCCCCGag------GGC-CCCAga -5'
29011 3' -61.9 NC_006146.1 + 151899 0.69 0.528746
Target:  5'- ----aCUCGAGGgGGCcCCCacuGGGGUCUg -3'
miRNA:   3'- ggaagGAGCUCC-CCGaGGG---CCCCAGA- -5'
29011 3' -61.9 NC_006146.1 + 104961 0.69 0.538097
Target:  5'- aCCUUCCccaaaaaGGccuGGGGCUCCCGaGGGggcUCUg -3'
miRNA:   3'- -GGAAGGag-----CU---CCCCGAGGGC-CCC---AGA- -5'
29011 3' -61.9 NC_006146.1 + 21332 0.69 0.54656
Target:  5'- cCCUUCCaagagucauucUCgGAGGGGCUgCCGGcgggcuuccugccGGUCa -3'
miRNA:   3'- -GGAAGG-----------AG-CUCCCCGAgGGCC-------------CCAGa -5'
29011 3' -61.9 NC_006146.1 + 73183 0.68 0.553172
Target:  5'- aCCUcCCggcauaggucgagCGAGGGGCUCCUGGcGUUc -3'
miRNA:   3'- -GGAaGGa------------GCUCCCCGAGGGCCcCAGa -5'
29011 3' -61.9 NC_006146.1 + 33309 0.68 0.585592
Target:  5'- gCCgcCgCUCGGuccuGGGGCU-CCGGGGUCc -3'
miRNA:   3'- -GGaaG-GAGCU----CCCCGAgGGCCCCAGa -5'
29011 3' -61.9 NC_006146.1 + 156648 0.68 0.612559
Target:  5'- cUCUUCCUCGAGgaccccuggacguguGGGCgagguuuggggcggCUgGGGGUCg -3'
miRNA:   3'- -GGAAGGAGCUC---------------CCCGa-------------GGgCCCCAGa -5'
29011 3' -61.9 NC_006146.1 + 47741 0.68 0.614491
Target:  5'- --gUCUUgGAGGGGCUggcCCUGGGGa-- -3'
miRNA:   3'- ggaAGGAgCUCCCCGA---GGGCCCCaga -5'
29011 3' -61.9 NC_006146.1 + 147414 0.68 0.619323
Target:  5'- cUCUUCCUCGAGgaccccuggacguguGGGCgagguuugggggcggCUgGGGGUCg -3'
miRNA:   3'- -GGAAGGAGCUC---------------CCCGa--------------GGgCCCCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.