miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29011 3' -61.9 NC_006146.1 + 44415 1.09 0.001138
Target:  5'- gCCUUCCUCGAGGGGCUCCCGGGGUCUg -3'
miRNA:   3'- -GGAAGGAGCUCCCCGAGGGCCCCAGA- -5'
29011 3' -61.9 NC_006146.1 + 169471 0.67 0.662805
Target:  5'- cCCUgggggCCUCGggggcggaggGGGGGgUCCCGcGGGg-- -3'
miRNA:   3'- -GGAa----GGAGC----------UCCCCgAGGGC-CCCaga -5'
29011 3' -61.9 NC_006146.1 + 8276 0.67 0.653159
Target:  5'- cCCgUUCUCucuGGGaGCcccacUCCCGGGGUCg -3'
miRNA:   3'- -GGaAGGAGcu-CCC-CG-----AGGGCCCCAGa -5'
29011 3' -61.9 NC_006146.1 + 53540 0.67 0.643497
Target:  5'- gCCgcgaggaC-CGAGGGGCUUCUGGGGg-- -3'
miRNA:   3'- -GGaag----GaGCUCCCCGAGGGCCCCaga -5'
29011 3' -61.9 NC_006146.1 + 104961 0.69 0.538097
Target:  5'- aCCUUCCccaaaaaGGccuGGGGCUCCCGaGGGggcUCUg -3'
miRNA:   3'- -GGAAGGag-----CU---CCCCGAGGGC-CCC---AGA- -5'
29011 3' -61.9 NC_006146.1 + 151899 0.69 0.528746
Target:  5'- ----aCUCGAGGgGGCcCCCacuGGGGUCUg -3'
miRNA:   3'- ggaagGAGCUCC-CCGaGGG---CCCCAGA- -5'
29011 3' -61.9 NC_006146.1 + 48552 0.66 0.726505
Target:  5'- gCCguugccgCCUCGAccuuggaaucauccGGGGCcUCgGGGGUCa -3'
miRNA:   3'- -GGaa-----GGAGCU--------------CCCCGaGGgCCCCAGa -5'
29011 3' -61.9 NC_006146.1 + 168539 0.67 0.662805
Target:  5'- cCCUgggggCCUCGggggcggaggGGGGGgUCCCGcGGGg-- -3'
miRNA:   3'- -GGAa----GGAGC----------UCCCCgAGGGC-CCCaga -5'
29011 3' -61.9 NC_006146.1 + 33309 0.68 0.585592
Target:  5'- gCCgcCgCUCGGuccuGGGGCU-CCGGGGUCc -3'
miRNA:   3'- -GGaaG-GAGCU----CCCCGAgGGCCCCAGa -5'
29011 3' -61.9 NC_006146.1 + 132975 0.7 0.482987
Target:  5'- --gUCCUCGGGGGGCgguggagaCCGcGGGUg- -3'
miRNA:   3'- ggaAGGAGCUCCCCGag------GGC-CCCAga -5'
29011 3' -61.9 NC_006146.1 + 126787 0.72 0.389833
Target:  5'- cCCcUCCUCGccGGGCagCCGGGGcCUg -3'
miRNA:   3'- -GGaAGGAGCucCCCGagGGCCCCaGA- -5'
29011 3' -61.9 NC_006146.1 + 62988 0.66 0.729298
Target:  5'- aUCUUCCUgGcccuGGGCUCC-GGGaGUCUg -3'
miRNA:   3'- -GGAAGGAgCuc--CCCGAGGgCCC-CAGA- -5'
29011 3' -61.9 NC_006146.1 + 46879 0.71 0.39781
Target:  5'- -----gUUGAGGGGCUCCUGGGuGUCc -3'
miRNA:   3'- ggaaggAGCUCCCCGAGGGCCC-CAGa -5'
29011 3' -61.9 NC_006146.1 + 167607 0.67 0.662805
Target:  5'- cCCUgggggCCUCGggggcggaggGGGGGgUCCCGcGGGg-- -3'
miRNA:   3'- -GGAa----GGAGC----------UCCCCgAGGGC-CCCaga -5'
29011 3' -61.9 NC_006146.1 + 53937 0.66 0.729298
Target:  5'- --cUCCUCGAgguccggacgcaGGGGCUCaCGGGcGUUUu -3'
miRNA:   3'- ggaAGGAGCU------------CCCCGAGgGCCC-CAGA- -5'
29011 3' -61.9 NC_006146.1 + 170402 0.67 0.662805
Target:  5'- cCCUgggggCCUCGggggcggaggGGGGGgUCCCGcGGGg-- -3'
miRNA:   3'- -GGAa----GGAGC----------UCCCCgAGGGC-CCCaga -5'
29011 3' -61.9 NC_006146.1 + 147414 0.68 0.619323
Target:  5'- cUCUUCCUCGAGgaccccuggacguguGGGCgagguuugggggcggCUgGGGGUCg -3'
miRNA:   3'- -GGAAGGAGCUC---------------CCCGa--------------GGgCCCCAGa -5'
29011 3' -61.9 NC_006146.1 + 150492 0.68 0.619323
Target:  5'- cUCUUCCUCGAGgaccccuggacguguGGGCgagguuugggggcggCUgGGGGUCg -3'
miRNA:   3'- -GGAAGGAGCUC---------------CCCGa--------------GGgCCCCAGa -5'
29011 3' -61.9 NC_006146.1 + 153570 0.68 0.619323
Target:  5'- cUCUUCCUCGAGgaccccuggacguguGGGCgagguuugggggcggCUgGGGGUCg -3'
miRNA:   3'- -GGAAGGAGCUC---------------CCCGa--------------GGgCCCCAGa -5'
29011 3' -61.9 NC_006146.1 + 112532 0.67 0.662805
Target:  5'- gCCUgggucaCCUCGAacucGGaGCUcagaCCCGGGGUCg -3'
miRNA:   3'- -GGAa-----GGAGCUc---CC-CGA----GGGCCCCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.