miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29014 5' -58.6 NC_006146.1 + 154656 0.66 0.855569
Target:  5'- gGCaGGCCGGgca-GGCCGGGUcuUGGGc -3'
miRNA:   3'- -CG-CCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 157733 0.66 0.855569
Target:  5'- gGCaGGCCGGgca-GGCCGGGUcuUGGGc -3'
miRNA:   3'- -CG-CCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 117879 0.66 0.855569
Target:  5'- gGCGGCCGcggCCAGCCGcGUgagGCccaGGGc -3'
miRNA:   3'- -CGCCGGUcaaGGUCGGUcCAa--CG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 21953 0.66 0.855569
Target:  5'- aGCGGgUAGggaggcaaagaUUCCAGCCGagaaGUgGCGGGg -3'
miRNA:   3'- -CGCCgGUC-----------AAGGUCGGUc---CAaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 168481 0.66 0.840082
Target:  5'- cCGGCCucacgUCCacGGUCGGGggGcCGGGg -3'
miRNA:   3'- cGCCGGuca--AGG--UCGGUCCaaC-GCCC- -5'
29014 5' -58.6 NC_006146.1 + 137741 0.66 0.837696
Target:  5'- cGCGG-CGGUgcCCAGCCGGgccaccccccacccGgaGCGGGg -3'
miRNA:   3'- -CGCCgGUCAa-GGUCGGUC--------------CaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 39995 0.66 0.832068
Target:  5'- uGCGGCCcGUagUGGCCGG--UGUGGGc -3'
miRNA:   3'- -CGCCGGuCAagGUCGGUCcaACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 41055 0.66 0.82963
Target:  5'- gGCGGCCcugGGggCCucgggguggagggaGGCCAGGgacaGCGaGGg -3'
miRNA:   3'- -CGCCGG---UCaaGG--------------UCGGUCCaa--CGC-CC- -5'
29014 5' -58.6 NC_006146.1 + 26789 0.66 0.855569
Target:  5'- uGCGGCgccaguacCAGUUCUAGCUuaGGcGUUG-GGGc -3'
miRNA:   3'- -CGCCG--------GUCAAGGUCGG--UC-CAACgCCC- -5'
29014 5' -58.6 NC_006146.1 + 151174 0.67 0.775212
Target:  5'- -aGGCCccuGUccgcgagggagagucUCUGGCCGGGcggGCGGGg -3'
miRNA:   3'- cgCCGGu--CA---------------AGGUCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 92215 0.67 0.789566
Target:  5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 92245 0.67 0.789566
Target:  5'- cCGGCCuGUggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGGuCAa-GGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 141454 0.67 0.801847
Target:  5'- aGUGGCCAGggaggacggagGGCCuGGccUGCGGGg -3'
miRNA:   3'- -CGCCGGUCaagg-------UCGGuCCa-ACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 39833 0.67 0.798366
Target:  5'- gGCGGCCucggccgcacAGUgggCCGGCgGGGgcugugUGCccGGGg -3'
miRNA:   3'- -CGCCGG----------UCAa--GGUCGgUCCa-----ACG--CCC- -5'
29014 5' -58.6 NC_006146.1 + 126176 0.67 0.796617
Target:  5'- cGCGGCCAccgcaucaggCCGGCCA----GCGGGg -3'
miRNA:   3'- -CGCCGGUcaa-------GGUCGGUccaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 104408 0.67 0.795741
Target:  5'- cCGGCCGGUgcaUCCGGCUgccgcauaccuacaAGGUggacagggGCGGc -3'
miRNA:   3'- cGCCGGUCA---AGGUCGG--------------UCCAa-------CGCCc -5'
29014 5' -58.6 NC_006146.1 + 124131 0.67 0.789566
Target:  5'- cCGGCCAGccaUCCGcCCGGGgu-CGGGa -3'
miRNA:   3'- cGCCGGUCa--AGGUcGGUCCaacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 103695 0.67 0.789566
Target:  5'- cCGGCCAGgcgaCCGGCCAcGGccaGUGGa -3'
miRNA:   3'- cGCCGGUCaa--GGUCGGU-CCaa-CGCCc -5'
29014 5' -58.6 NC_006146.1 + 92305 0.67 0.789566
Target:  5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 92275 0.67 0.789566
Target:  5'- cCGGCCuGGggCUgcuGCUGGGggGCGGGc -3'
miRNA:   3'- cGCCGG-UCaaGGu--CGGUCCaaCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.