miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29014 5' -58.6 NC_006146.1 + 117879 0.66 0.855569
Target:  5'- gGCGGCCGcggCCAGCCGcGUgagGCccaGGGc -3'
miRNA:   3'- -CGCCGGUcaaGGUCGGUcCAa--CG---CCC- -5'
29014 5' -58.6 NC_006146.1 + 41055 0.66 0.82963
Target:  5'- gGCGGCCcugGGggCCucgggguggagggaGGCCAGGgacaGCGaGGg -3'
miRNA:   3'- -CGCCGG---UCaaGG--------------UCGGUCCaa--CGC-CC- -5'
29014 5' -58.6 NC_006146.1 + 120506 0.66 0.823882
Target:  5'- gGCGGCCgAGgacgCgAGCCGcguggaugcGGcgGCGGGa -3'
miRNA:   3'- -CGCCGG-UCaa--GgUCGGU---------CCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 100758 0.66 0.823882
Target:  5'- cCGGCCAGg---AGCCAGGcgaagGCGGc -3'
miRNA:   3'- cGCCGGUCaaggUCGGUCCaa---CGCCc -5'
29014 5' -58.6 NC_006146.1 + 49866 0.66 0.823882
Target:  5'- aCGGcCCAGUaugUCCAGgCGGGUcuUGCGc- -3'
miRNA:   3'- cGCC-GGUCA---AGGUCgGUCCA--ACGCcc -5'
29014 5' -58.6 NC_006146.1 + 54998 0.66 0.815531
Target:  5'- gGUGGCCGGaagccccCCGGgCGGGauggggGCGGGc -3'
miRNA:   3'- -CGCCGGUCaa-----GGUCgGUCCaa----CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 124285 0.66 0.818891
Target:  5'- aCGGCCGGgacaucaacaggcucUUCCagGGCCAGGccaauggUGCuGGGu -3'
miRNA:   3'- cGCCGGUC---------------AAGG--UCGGUCCa------ACG-CCC- -5'
29014 5' -58.6 NC_006146.1 + 162047 0.66 0.832068
Target:  5'- uGUGGgaaaCCGGUUCCA-CCGcGGggGUGGGu -3'
miRNA:   3'- -CGCC----GGUCAAGGUcGGU-CCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 147063 0.66 0.839289
Target:  5'- -gGGCCAGgUCCcggcguagggaaaGGCCAGGgagagagaaGUGGGc -3'
miRNA:   3'- cgCCGGUCaAGG-------------UCGGUCCaa-------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 39995 0.66 0.832068
Target:  5'- uGCGGCCcGUagUGGCCGG--UGUGGGc -3'
miRNA:   3'- -CGCCGGuCAagGUCGGUCcaACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 137741 0.66 0.837696
Target:  5'- cGCGG-CGGUgcCCAGCCGGgccaccccccacccGgaGCGGGg -3'
miRNA:   3'- -CGCCgGUCAa-GGUCGGUC--------------CaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 168481 0.66 0.840082
Target:  5'- cCGGCCucacgUCCacGGUCGGGggGcCGGGg -3'
miRNA:   3'- cGCCGGuca--AGG--UCGGUCCaaC-GCCC- -5'
29014 5' -58.6 NC_006146.1 + 157733 0.66 0.855569
Target:  5'- gGCaGGCCGGgca-GGCCGGGUcuUGGGc -3'
miRNA:   3'- -CG-CCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 154656 0.66 0.855569
Target:  5'- gGCaGGCCGGgca-GGCCGGGUcuUGGGc -3'
miRNA:   3'- -CG-CCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 151578 0.66 0.855569
Target:  5'- gGCaGGCCGGgca-GGCCGGGUcuUGGGc -3'
miRNA:   3'- -CG-CCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 148500 0.66 0.855569
Target:  5'- gGCaGGCCGGgca-GGCCGGGUcuUGGGc -3'
miRNA:   3'- -CG-CCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 145422 0.66 0.855569
Target:  5'- gGCaGGCCGGgca-GGCCGGGUcuUGGGc -3'
miRNA:   3'- -CG-CCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 142344 0.66 0.855569
Target:  5'- gGCaGGCCGGgca-GGCCGGGUcuUGGGc -3'
miRNA:   3'- -CG-CCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 26789 0.66 0.855569
Target:  5'- uGCGGCgccaguacCAGUUCUAGCUuaGGcGUUG-GGGc -3'
miRNA:   3'- -CGCCG--------GUCAAGGUCGG--UC-CAACgCCC- -5'
29014 5' -58.6 NC_006146.1 + 21953 0.66 0.855569
Target:  5'- aGCGGgUAGggaggcaaagaUUCCAGCCGagaaGUgGCGGGg -3'
miRNA:   3'- -CGCCgGUC-----------AAGGUCGGUc---CAaCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.