miRNA display CGI


Results 1 - 20 of 135 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29014 5' -58.6 NC_006146.1 + 7344 0.68 0.705341
Target:  5'- cCGGCuUAGUUCCAGUC-GGUagucaUGCGGu -3'
miRNA:   3'- cGCCG-GUCAAGGUCGGuCCA-----ACGCCc -5'
29014 5' -58.6 NC_006146.1 + 10735 0.77 0.277357
Target:  5'- gGCaGCCAGagCCAGCCGGGgccaUGCGGc -3'
miRNA:   3'- -CGcCGGUCaaGGUCGGUCCa---ACGCCc -5'
29014 5' -58.6 NC_006146.1 + 12875 0.66 0.840082
Target:  5'- gGUGGCUGGgca-GGCCGGGUcuCGGGu -3'
miRNA:   3'- -CGCCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 13395 0.67 0.771574
Target:  5'- cGCGGCCAcGgacugccUCAGCCAGGUcUGCa-- -3'
miRNA:   3'- -CGCCGGU-Caa-----GGUCGGUCCA-ACGccc -5'
29014 5' -58.6 NC_006146.1 + 14132 0.67 0.789566
Target:  5'- gGCGGCCua---CAGCCAGGUguacGCGcuGGc -3'
miRNA:   3'- -CGCCGGucaagGUCGGUCCAa---CGC--CC- -5'
29014 5' -58.6 NC_006146.1 + 15041 0.74 0.41898
Target:  5'- cUGGCCAGggCCcGCCGGGccUGCGaGGa -3'
miRNA:   3'- cGCCGGUCaaGGuCGGUCCa-ACGC-CC- -5'
29014 5' -58.6 NC_006146.1 + 15309 0.71 0.576753
Target:  5'- aGgGGCCGGaggCCAGCCccGGUgugccccugGCGGGc -3'
miRNA:   3'- -CgCCGGUCaa-GGUCGGu-CCAa--------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 19030 0.66 0.840082
Target:  5'- gGUGGCUGGgca-GGCCGGGUcuCGGGu -3'
miRNA:   3'- -CGCCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 21953 0.66 0.855569
Target:  5'- aGCGGgUAGggaggcaaagaUUCCAGCCGagaaGUgGCGGGg -3'
miRNA:   3'- -CGCCgGUC-----------AAGGUCGGUc---CAaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 22108 0.66 0.840082
Target:  5'- gGUGGCUGGgca-GGCCGGGUcuCGGGu -3'
miRNA:   3'- -CGCCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 24367 0.72 0.518593
Target:  5'- aGUGGCgCAGggCCAGCucCAGGgcGCGGc -3'
miRNA:   3'- -CGCCG-GUCaaGGUCG--GUCCaaCGCCc -5'
29014 5' -58.6 NC_006146.1 + 25186 0.66 0.840082
Target:  5'- gGUGGCUGGgca-GGCCGGGUcuCGGGu -3'
miRNA:   3'- -CGCCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 26789 0.66 0.855569
Target:  5'- uGCGGCgccaguacCAGUUCUAGCUuaGGcGUUG-GGGc -3'
miRNA:   3'- -CGCCG--------GUCAAGGUCGG--UC-CAACgCCC- -5'
29014 5' -58.6 NC_006146.1 + 27628 0.67 0.771574
Target:  5'- gGUGGCCagggaAGUUCCgGGCCAGcGUcacCGGGc -3'
miRNA:   3'- -CGCCGG-----UCAAGG-UCGGUC-CAac-GCCC- -5'
29014 5' -58.6 NC_006146.1 + 28264 0.66 0.840082
Target:  5'- gGUGGCUGGgca-GGCCGGGUcuCGGGu -3'
miRNA:   3'- -CGCCGGUCaaggUCGGUCCAacGCCC- -5'
29014 5' -58.6 NC_006146.1 + 29816 0.67 0.789566
Target:  5'- -gGGCCAcuuaUCCAGCCAGGagcaaGGGu -3'
miRNA:   3'- cgCCGGUca--AGGUCGGUCCaacg-CCC- -5'
29014 5' -58.6 NC_006146.1 + 33094 0.73 0.47197
Target:  5'- uGCGGCUcuGGgg-CAGCCGGGUggccgccgGCGGGu -3'
miRNA:   3'- -CGCCGG--UCaagGUCGGUCCAa-------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 34058 0.69 0.67591
Target:  5'- cCGGCCGGgggUCCcguggcacggGGCCGGGgguccCGGGg -3'
miRNA:   3'- cGCCGGUCa--AGG----------UCGGUCCaac--GCCC- -5'
29014 5' -58.6 NC_006146.1 + 34139 0.72 0.512897
Target:  5'- cGCGGCCGGgccucccggagccCCGGCgAGGgUGgGGGg -3'
miRNA:   3'- -CGCCGGUCaa-----------GGUCGgUCCaACgCCC- -5'
29014 5' -58.6 NC_006146.1 + 39833 0.67 0.798366
Target:  5'- gGCGGCCucggccgcacAGUgggCCGGCgGGGgcugugUGCccGGGg -3'
miRNA:   3'- -CGCCGG----------UCAa--GGUCGgUCCa-----ACG--CCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.