miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29014 5' -58.6 NC_006146.1 + 47514 1.13 0.001081
Target:  5'- cGCGGCCAGUUCCAGCCAGGUUGCGGGg -3'
miRNA:   3'- -CGCCGGUCAAGGUCGGUCCAACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 10735 0.77 0.277357
Target:  5'- gGCaGCCAGagCCAGCCGGGgccaUGCGGc -3'
miRNA:   3'- -CGcCGGUCaaGGUCGGUCCa---ACGCCc -5'
29014 5' -58.6 NC_006146.1 + 140667 0.74 0.377687
Target:  5'- uGCGGCCaauuuccggGGUaUCCGGCCAGcccgGCGGGc -3'
miRNA:   3'- -CGCCGG---------UCA-AGGUCGGUCcaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 57035 0.74 0.41898
Target:  5'- aCGGCCGGggcgaagCC-GCCAGGguugagGCGGGa -3'
miRNA:   3'- cGCCGGUCaa-----GGuCGGUCCaa----CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 15041 0.74 0.41898
Target:  5'- cUGGCCAGggCCcGCCGGGccUGCGaGGa -3'
miRNA:   3'- cGCCGGUCaaGGuCGGUCCa-ACGC-CC- -5'
29014 5' -58.6 NC_006146.1 + 48341 0.73 0.427562
Target:  5'- -gGGCCAGgcgUCCAGUCuGGccaGCGGGc -3'
miRNA:   3'- cgCCGGUCa--AGGUCGGuCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 33094 0.73 0.47197
Target:  5'- uGCGGCUcuGGgg-CAGCCGGGUggccgccgGCGGGu -3'
miRNA:   3'- -CGCCGG--UCaagGUCGGUCCAa-------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 42790 0.72 0.481132
Target:  5'- cGUGGCCGcc-UCGGCCAGGUUgGCGGu -3'
miRNA:   3'- -CGCCGGUcaaGGUCGGUCCAA-CGCCc -5'
29014 5' -58.6 NC_006146.1 + 123701 0.72 0.490378
Target:  5'- gGCGGCCAGgggCCuggcGCuCGGGgcggcgGCGGGc -3'
miRNA:   3'- -CGCCGGUCaa-GGu---CG-GUCCaa----CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 45119 0.72 0.509113
Target:  5'- uCGGCCGGUgaCC-GCCGGGagccuugggcuUUGCGGGc -3'
miRNA:   3'- cGCCGGUCAa-GGuCGGUCC-----------AACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 34139 0.72 0.512897
Target:  5'- cGCGGCCGGgccucccggagccCCGGCgAGGgUGgGGGg -3'
miRNA:   3'- -CGCCGGUCaa-----------GGUCGgUCCaACgCCC- -5'
29014 5' -58.6 NC_006146.1 + 137970 0.72 0.518593
Target:  5'- cGCGGCCGGg-CCucCCGGGggcccgGCGGGg -3'
miRNA:   3'- -CGCCGGUCaaGGucGGUCCaa----CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 24367 0.72 0.518593
Target:  5'- aGUGGCgCAGggCCAGCucCAGGgcGCGGc -3'
miRNA:   3'- -CGCCG-GUCaaGGUCG--GUCCaaCGCCc -5'
29014 5' -58.6 NC_006146.1 + 168347 0.72 0.528143
Target:  5'- cUGGCgGGggCCAGCgCGGGgucccgggGCGGGg -3'
miRNA:   3'- cGCCGgUCaaGGUCG-GUCCaa------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 167415 0.72 0.528143
Target:  5'- cUGGCgGGggCCAGCgCGGGgucccgggGCGGGg -3'
miRNA:   3'- cGCCGgUCaaGGUCG-GUCCaa------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 170210 0.72 0.528143
Target:  5'- cUGGCgGGggCCAGCgCGGGgucccgggGCGGGg -3'
miRNA:   3'- cGCCGgUCaaGGUCG-GUCCaa------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 169279 0.72 0.528143
Target:  5'- cUGGCgGGggCCAGCgCGGGgucccgggGCGGGg -3'
miRNA:   3'- cGCCGgUCaaGGUCG-GUCCaa------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 169107 0.71 0.566933
Target:  5'- cGCGGCCAGUcCCuggauGUCGGGgaggGCccGGGg -3'
miRNA:   3'- -CGCCGGUCAaGGu----CGGUCCaa--CG--CCC- -5'
29014 5' -58.6 NC_006146.1 + 167243 0.71 0.566933
Target:  5'- cGCGGCCAGUcCCuggauGUCGGGgaggGCccGGGg -3'
miRNA:   3'- -CGCCGGUCAaGGu----CGGUCCaa--CG--CCC- -5'
29014 5' -58.6 NC_006146.1 + 168175 0.71 0.566933
Target:  5'- cGCGGCCAGUcCCuggauGUCGGGgaggGCccGGGg -3'
miRNA:   3'- -CGCCGGUCAaGGu----CGGUCCaa--CG--CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.