miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29014 5' -58.6 NC_006146.1 + 39995 0.66 0.832068
Target:  5'- uGCGGCCcGUagUGGCCGG--UGUGGGc -3'
miRNA:   3'- -CGCCGGuCAagGUCGGUCcaACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 41055 0.66 0.82963
Target:  5'- gGCGGCCcugGGggCCucgggguggagggaGGCCAGGgacaGCGaGGg -3'
miRNA:   3'- -CGCCGG---UCaaGG--------------UCGGUCCaa--CGC-CC- -5'
29014 5' -58.6 NC_006146.1 + 42790 0.72 0.481132
Target:  5'- cGUGGCCGcc-UCGGCCAGGUUgGCGGu -3'
miRNA:   3'- -CGCCGGUcaaGGUCGGUCCAA-CGCCc -5'
29014 5' -58.6 NC_006146.1 + 43484 0.68 0.715046
Target:  5'- gGCGGCC-GUUgacaCCGGCUccGGcgGCGGGg -3'
miRNA:   3'- -CGCCGGuCAA----GGUCGGu-CCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 43520 0.69 0.695578
Target:  5'- -gGGCCAGgcugCCGGCCaccaucagugGGGUguccGUGGGu -3'
miRNA:   3'- cgCCGGUCaa--GGUCGG----------UCCAa---CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 45046 0.69 0.689696
Target:  5'- -aGGCCGGggCCGGCUcccuaggggcggcugAGGUgccucGUGGGg -3'
miRNA:   3'- cgCCGGUCaaGGUCGG---------------UCCAa----CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 45119 0.72 0.509113
Target:  5'- uCGGCCGGUgaCC-GCCGGGagccuugggcuUUGCGGGc -3'
miRNA:   3'- cGCCGGUCAa-GGuCGGUCC-----------AACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 45416 0.68 0.743725
Target:  5'- -gGGCCAGcgcgaggccCCGGCCGGGUUgaaGUGGa -3'
miRNA:   3'- cgCCGGUCaa-------GGUCGGUCCAA---CGCCc -5'
29014 5' -58.6 NC_006146.1 + 45916 0.67 0.771574
Target:  5'- cCGGCCGGUgaCCGuGCCguAGGUgGaCGGGg -3'
miRNA:   3'- cGCCGGUCAa-GGU-CGG--UCCAaC-GCCC- -5'
29014 5' -58.6 NC_006146.1 + 47514 1.13 0.001081
Target:  5'- cGCGGCCAGUUCCAGCCAGGUUGCGGGg -3'
miRNA:   3'- -CGCCGGUCAAGGUCGGUCCAACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 48341 0.73 0.427562
Target:  5'- -gGGCCAGgcgUCCAGUCuGGccaGCGGGc -3'
miRNA:   3'- cgCCGGUCa--AGGUCGGuCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 48601 0.69 0.665031
Target:  5'- -aGGCCAgaaggguGUUCCAGUCGucgggugccguGGggGCGGGc -3'
miRNA:   3'- cgCCGGU-------CAAGGUCGGU-----------CCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 49482 0.67 0.807024
Target:  5'- -gGGCCgcGGUgUCGGCCAGGggcgGCGuGGc -3'
miRNA:   3'- cgCCGG--UCAaGGUCGGUCCaa--CGC-CC- -5'
29014 5' -58.6 NC_006146.1 + 49866 0.66 0.823882
Target:  5'- aCGGcCCAGUaugUCCAGgCGGGUcuUGCGc- -3'
miRNA:   3'- cGCC-GGUCA---AGGUCgGUCCA--ACGCcc -5'
29014 5' -58.6 NC_006146.1 + 51204 0.68 0.705341
Target:  5'- cGUGGUaCAGggcaUCCacgaGGCCGGGgugGCGGGu -3'
miRNA:   3'- -CGCCG-GUCa---AGG----UCGGUCCaa-CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 51604 0.69 0.666021
Target:  5'- -aGGCCGGUUgcgucgggacagCCGGCUgAGGUUGaGGGa -3'
miRNA:   3'- cgCCGGUCAA------------GGUCGG-UCCAACgCCC- -5'
29014 5' -58.6 NC_006146.1 + 52990 0.69 0.695578
Target:  5'- gGCGGaCCug--CCGGCCGuGGccGCGGGg -3'
miRNA:   3'- -CGCC-GGucaaGGUCGGU-CCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 53028 0.68 0.756838
Target:  5'- cGCGGCUGGccgCGGCCgccgccgagagguaaGGGggGCGGGu -3'
miRNA:   3'- -CGCCGGUCaagGUCGG---------------UCCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 53493 0.66 0.847918
Target:  5'- -gGGCCGGgggugcggUCUGGCuCuGGcUGCGGGc -3'
miRNA:   3'- cgCCGGUCa-------AGGUCG-GuCCaACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 54998 0.66 0.815531
Target:  5'- gGUGGCCGGaagccccCCGGgCGGGauggggGCGGGc -3'
miRNA:   3'- -CGCCGGUCaa-----GGUCgGUCCaa----CGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.