miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29015 3' -61.8 NC_006146.1 + 18988 0.68 0.585238
Target:  5'- -----cCCUCCGGCGgCCGGACCcgaGGa -3'
miRNA:   3'- gggagaGGAGGUCGCgGGCCUGGa--CC- -5'
29015 3' -61.8 NC_006146.1 + 19446 0.71 0.456553
Target:  5'- cCCCUCggguccgCCUCCAgGCGUCCu--CCUGGu -3'
miRNA:   3'- -GGGAGa------GGAGGU-CGCGGGccuGGACC- -5'
29015 3' -61.8 NC_006146.1 + 19577 0.7 0.51014
Target:  5'- aCCUCUCggUCCGGCGCgaGGAcagcuCCUGGc -3'
miRNA:   3'- gGGAGAGg-AGGUCGCGggCCU-----GGACC- -5'
29015 3' -61.8 NC_006146.1 + 20091 0.66 0.719176
Target:  5'- cCUCUCUcCCUCCccgaGGC-CCCGGcuCCUGa -3'
miRNA:   3'- -GGGAGA-GGAGG----UCGcGGGCCu-GGACc -5'
29015 3' -61.8 NC_006146.1 + 21085 0.67 0.671785
Target:  5'- uCCCUCgcccaucgCCUugcCCuGCGCCCgGGGCCa-- -3'
miRNA:   3'- -GGGAGa-------GGA---GGuCGCGGG-CCUGGacc -5'
29015 3' -61.8 NC_006146.1 + 22066 0.68 0.585238
Target:  5'- -----cCCUCCGGCGgCCGGACCcgaGGa -3'
miRNA:   3'- gggagaGGAGGUCGCgGGCCUGGa--CC- -5'
29015 3' -61.8 NC_006146.1 + 22524 0.71 0.456553
Target:  5'- cCCCUCggguccgCCUCCAgGCGUCCu--CCUGGu -3'
miRNA:   3'- -GGGAGa------GGAGGU-CGCGGGccuGGACC- -5'
29015 3' -61.8 NC_006146.1 + 23169 0.66 0.719176
Target:  5'- cCUCUCUcCCUCCccgaGGC-CCCGGcuCCUGa -3'
miRNA:   3'- -GGGAGA-GGAGG----UCGcGGGCCu-GGACc -5'
29015 3' -61.8 NC_006146.1 + 23708 0.69 0.519333
Target:  5'- cCCC-CUCCUCU-GCGCaCCGGGCgaagGGg -3'
miRNA:   3'- -GGGaGAGGAGGuCGCG-GGCCUGga--CC- -5'
29015 3' -61.8 NC_006146.1 + 23826 0.73 0.337439
Target:  5'- uCUCUCUCC-CUGGCcuuucccuacGCCgGGACCUGGc -3'
miRNA:   3'- -GGGAGAGGaGGUCG----------CGGgCCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 24163 0.67 0.671785
Target:  5'- uCCCUCgcccaucgCCUugcCCuGCGCCCgGGGCCa-- -3'
miRNA:   3'- -GGGAGa-------GGA---GGuCGCGGG-CCUGGacc -5'
29015 3' -61.8 NC_006146.1 + 25144 0.68 0.585238
Target:  5'- -----cCCUCCGGCGgCCGGACCcgaGGa -3'
miRNA:   3'- gggagaGGAGGUCGCgGGCCUGGa--CC- -5'
29015 3' -61.8 NC_006146.1 + 25156 0.71 0.447914
Target:  5'- aCCUCUaCCUCCAGauccuGCCCGG-CCa-- -3'
miRNA:   3'- gGGAGA-GGAGGUCg----CGGGCCuGGacc -5'
29015 3' -61.8 NC_006146.1 + 25602 0.71 0.456553
Target:  5'- cCCCUCggguccgCCUCCAgGCGUCCu--CCUGGu -3'
miRNA:   3'- -GGGAGa------GGAGGU-CGCGGGccuGGACC- -5'
29015 3' -61.8 NC_006146.1 + 26247 0.66 0.719176
Target:  5'- cCUCUCUcCCUCCccgaGGC-CCCGGcuCCUGa -3'
miRNA:   3'- -GGGAGA-GGAGG----UCGcGGGCCu-GGACc -5'
29015 3' -61.8 NC_006146.1 + 27241 0.67 0.671785
Target:  5'- uCCCUCgcccaucgCCUugcCCuGCGCCCgGGGCCa-- -3'
miRNA:   3'- -GGGAGa-------GGA---GGuCGCGGG-CCUGGacc -5'
29015 3' -61.8 NC_006146.1 + 28222 0.68 0.585238
Target:  5'- -----cCCUCCGGCGgCCGGACCcgaGGa -3'
miRNA:   3'- gggagaGGAGGUCGCgGGCCUGGa--CC- -5'
29015 3' -61.8 NC_006146.1 + 28680 0.71 0.456553
Target:  5'- cCCCUCggguccgCCUCCAgGCGUCCu--CCUGGu -3'
miRNA:   3'- -GGGAGa------GGAGGU-CGCGGGccuGGACC- -5'
29015 3' -61.8 NC_006146.1 + 29325 0.66 0.719176
Target:  5'- cCUCUCUcCCUCCccgaGGC-CCCGGcuCCUGa -3'
miRNA:   3'- -GGGAGA-GGAGG----UCGcGGGCCu-GGACc -5'
29015 3' -61.8 NC_006146.1 + 31504 0.67 0.671785
Target:  5'- aCCUC-CC-CCGGCGCCguggGGGCCUu- -3'
miRNA:   3'- gGGAGaGGaGGUCGCGGg---CCUGGAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.